Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq3 91.5 1e-13 seq2 84.2 2e-11 >seq1 Length=75119905 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48511 CCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC 48570 ||| | ||| | ||| || ||| |||||| || ||||||||||| |||| || | Sbjct 27894286 CCTGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCC 27894345 Query 48571 GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTT 48630 |||||||||||||| ||| || | || | ||||||||| ||| || | | ||||| Sbjct 27894346 ATCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTT 27894405 Query 48631 GTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 |||| || || ||||| | | || ||||| | |||||| ||| | || || Sbjct 27894406 GTCCTGGATCTTTGCCTTGACATTGTCGATCGTATCAGAAGACTCGACCTCAAGGGTGAT 27894465 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| || |||||||| || |||||||| ||||||||| Sbjct 27894466 GGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC 27894502 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 48539 TTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAAT 48597 || || ||||||||||| || | | || ||| | |||||||||||||| || || | || Sbjct 27881077 TTCTGGATGTTGTAATCCGCGAGAGTG-CGCCCATCCTCCAGCTGCTTGCCAGCGAAGAT 27881135 Query 48598 TAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGC 48657 | |||||||| ||| || | | ||||||||| || || ||||| | | Sbjct 27881136 GAGGCGCTGCTGGTCCGGGGGGAGGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTC 27881195 Query 48658 TATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAA 48717 || || |||| |||||| || || || ||||| || ||||||||||| |||||||| Sbjct 27881196 GATCGTGTCGGAAGACTCGACCTAGAGGGTAATGGTCTTGCCGGTGAGAGTCTTCACAAA 27881255 Query 48718 AATCTGCATC 48727 ||||||||| Sbjct 27881256 GATCTGCATC 27881265 >seq3 Length=59935730 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||||| ||||| ||| |||||| || |||||||| ||||| Sbjct 3234591 ACCACCACGCAGACGCAGCACTAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 3234650 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || | |||||||||||||| || | | || ||||||||||| ||| | Sbjct 3234651 -AAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCCGGGG 3234709 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| || || ||||| | | ||||| || | ||||| Sbjct 3234710 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCTGACGACTCAA 3234769 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || || || ||||| || |||||||| Sbjct 3234770 CCTCAAGGGTGATGGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCAT 3234818 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || ||||||||||| |||| ||| ||||||| |||||| Sbjct 13693469 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGCCCGTCCTCAAGCTGC 13693410 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | |||| | |||||||| || || | | |||||||| ||| ||| Sbjct 13693409 TTCCCAGCAAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGAATCTTC 13693350 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || || || || | |||||| ||| | || ||||| ||||| | Sbjct 13693349 GCCTTGACGTTGTCG--ATTGTGTCCGAAGACTCAACCTCCAAAGTGATGGTCTTACCAG 13693292 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || ||||| |||||||| Sbjct 13693291 TAAGCGTCTTGACAAAGATCTGCAT 13693267 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || | |||||| || |||| ||| |||||||||||||| Sbjct 31827590 TGGAGGGTGGACTCCTTCTGGACGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCCAGCTGC 31827649 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| ||| || | ||||||||| | || Sbjct 31827650 TTCCCGGCGAAGATGAGCCGCTGCTGCTCCGGCGGGACCCCCTCCTTGTCCTGCACCTTG 31827709 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | || || || | |||||| ||| | || || || || || || Sbjct 31827710 GCCTTCACGTTCTCGATCGTGTCCGATGACTCCACCTCCAGCGTGATCGTCTTCCCCGTC 31827769 Query 48704 AGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 || || ||||| || |||||||||||| || Sbjct 31827770 AGCGTCTTCACGAAGATCTGCATCGTGGCT 31827799 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| ||||||||||| ||||| | || | |||||||||||| Sbjct 2682178 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCGAGGGTGCGACCATCCTCCAGCTGC 2682237 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | ||||||||| ||| || | | ||||| ||| || || Sbjct 2682238 TTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTG 2682297 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || ||||| || | ||||| ||| | || ||||| || || | Sbjct 2682298 GCCTTAACGTTGTCG--ATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAG 2682355 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | | ||| |||||||| ||||||||| Sbjct 2682356 TCAAAGTCTTCACAAAGATCTGCATC 2682381 >seq2 Length=59384932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || |||||||||||||| Sbjct 10639253 TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 10639312 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| || | | ||||| ||| || || Sbjct 10639313 TTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTG 10639372 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || ||||| || | |||||| ||| | || ||||| ||||| | Sbjct 10639373 GCCTTCACGTTGTCG--ATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTACCCG 10639430 Query 48702 TGAGAGTTTTCACAAAAATCTGCATCGTG 48730 |||| || ||||| || ||||||||| || Sbjct 10639431 TGAGGGTCTTCACGAAGATCTGCATCTTG 10639459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251056248028