Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2 116 2e-21 seq4 107 1e-18 seq3 102 4e-17 seq5 100 1e-16 seq1 98.7 5e-16 >seq2 Length=59384932 Score = 116 bits (128), Expect = 2e-21 Identities = 81/93 (87%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||| Sbjct 59062544 AATTTTTAAAAAAAAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 59062603 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||| ||||||||||||||| Sbjct 59062604 GCACGACGCTCTAACCAGCTGAGCTAATGGGCC 59062636 Score = 111 bits (122), Expect = 8e-20 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || |||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 55959601 AAAAAT-AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 55959543 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| ||||||||||||||| Sbjct 55959542 CTCTAACCAGCTGAGCTAATGGGCC 55959518 Score = 107 bits (118), Expect = 1e-18 Identities = 84/101 (83%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||||| || || ||||||| ||||||||| | | |||||||| ||||||||| Sbjct 52597097 AAATATATTATAAAGAAAAAATG----TGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 52597042 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||| |||||||||| |||| Sbjct 52597041 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 52597001 Score = 105 bits (116), Expect = 3e-18 Identities = 79/92 (86%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||| || ||| |||| |||||||| | | |||||||| |||||||||||||||||| Sbjct 45507775 ATTAAAAAGAAAAAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 45507833 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||| |||||||||| |||| Sbjct 45507834 CACGACGCTCTAACCAGCTGAGCTAATAGGCC 45507865 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||| ||| ||| ||||||||| | | |||||||| |||||||||| ||||||| || Sbjct 55607075 ATAATAAA--AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCCTTATTAGAGCG 55607018 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 55607017 ACGCTCTAACCAACTGAGCTAATAGGCC 55606990 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 19700093 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 19700034 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 19700033 TGAGCTAATAGGCCG 19700019 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 55323530 AAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 55323471 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 55323470 CAGCTGAGCTAATAGGCC 55323453 >seq4 Length=48772488 Score = 107 bits (118), Expect = 1e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508 || ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| Sbjct 39068981 ATAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCT 39068922 Query 11509 RACCAACTGAGCTAATGGGCC 11529 |||| |||||||||| |||| Sbjct 39068921 AACCAGCTGAGCTAATAGGCC 39068901 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 31935343 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 31935402 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 31935403 TGAGCTAATAGGCC 31935416 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 48300621 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 48300680 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 48300681 TGAGCTAATAGGCC 48300694 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 35831858 AAAGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 35831917 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 35831918 CAGCTGAGCTAATAGGCC 35831935 >seq3 Length=59935730 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 48962582 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 48962523 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 48962522 CAGCTGAGCTAATAGGCC 48962505 Score = 98.7 bits (108), Expect = 5e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 30213873 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 30213814 Query 11516 TGAGCTAATGGGC 11528 ||||||||| ||| Sbjct 30213813 TGAGCTAATAGGC 30213801 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 41628883 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 41628824 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 41628823 TGAGCTAATAGGCC 41628810 >seq5 Length=28563423 Score = 100 bits (110), Expect = 1e-16 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 16634374 AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 16634315 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||| |||||||||| |||| Sbjct 16634314 CCAGCTGAGCTAATAGGCC 16634296 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 18880537 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 18880596 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 18880597 TGAGCTAATAGGCC 18880610 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/92 (84%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | |||| ||||||| | | |||||||| |||||||||||||||||||| Sbjct 18333676 AATAAAATAAAAAAT-GGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 18333734 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||| |||| |||||||||| |||| || Sbjct 18333735 GACGCTCTAACCAGCTGAGCTAATAGGCCTTC 18333766 >seq1 Length=75119905 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 16379730 AAATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 16379789 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 16379790 CAGCTGAGCTAATAGGCC 16379807 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261491110766128