Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 132 8e-27 seq5 131 3e-26 seq4 129 9e-26 seq3 129 9e-26 seq2 129 9e-26 >seq1 Length=75119905 Score = 132 bits (146), Expect = 8e-27 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || |||||||| ||||| || ||||| Sbjct 73888956 CTGCGGGACAACATCCAGGGCATCACGAAGCCGGCGATCCGTCGCCTGGCGCGCCGTGGC 73888897 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 73888896 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 73888837 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 73888836 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 73888777 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 73888776 ACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCG 73888736 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| || | || Sbjct 4030516 CTCCGGGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGCGGAGGGGC 4030457 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 4030456 GGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 4030397 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 4030396 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCGCGCCGCAAGACCGTC 4030337 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 4030336 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 4030296 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| || | || Sbjct 4046974 CTCCGGGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGCGGAGGGGC 4046915 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 4046914 GGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 4046855 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 4046854 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCGCGCCGCAAGACCGTC 4046795 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || || || Sbjct 4046794 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGACG 4046754 Score = 104 bits (114), Expect = 4e-18 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || ||||||||||| || || ||||| || |||||||| || || | | || Sbjct 66978062 TCTGCGGGACAACATCCAAGGCATTACGAAGCCGGCGATCCGTCGGCTTGCGAGGAGGGG 66978121 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||||| |||| || | |||| || |||| || | || | |||||||| Sbjct 66978122 CGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTT 66978181 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| || || || ||| |||||||| || || ||||| || Sbjct 66978182 CCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCATGCGCGCCGCAAGACCGT 66978241 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| |||| || || | || || || ||||| Sbjct 66978242 GACCGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGGGCCG 66978283 >seq5 Length=28563423 Score = 131 bits (144), Expect = 3e-26 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || || |||||||| || ||||||||||| || | Sbjct 22466771 CGCCAAGCGCCACCGGAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGA 22466713 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||| | ||||| | | || || || ||||| |||| || || |||| || |||| Sbjct 22466712 TCCGTAGGCTGGCCAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGA 22466653 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||||||| ||| ||| |||| || || || ||| |||| Sbjct 22466652 CCCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCG 22466593 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 22466592 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 22466533 Query 16671 GCCG 16674 |||| Sbjct 22466532 GCCG 22466529 Score = 129 bits (142), Expect = 9e-26 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||||||||| || || Sbjct 22464386 GCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 22464328 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || || |||| || |||| Sbjct 22464327 CCGGAGGCTGGCCAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGAC 22464268 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 22464267 CCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 22464208 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 22464207 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 22464148 Query 16672 CCG 16674 ||| Sbjct 22464147 CCG 22464145 >seq4 Length=48772488 Score = 129 bits (142), Expect = 9e-26 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| |||||||| || | || Sbjct 42617299 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGTCTGGCGCGCAGGGGC 42617240 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 42617239 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 42617180 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 42617179 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 42617120 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| | ||||| ||||||| || | || || || || || Sbjct 42617119 ACCGCGATGGACGTCGTCTACGCGCTCAAGCGCCAGGGACG 42617079 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| || ||||| || || || Sbjct 36809019 CTGCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGCGCCTGGCGCGGCGGGGC 36809078 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 36809079 GGCGTGAAGCGGATCTCGGGGCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGATCTTC 36809138 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| |||||||| || || ||||| ||| Sbjct 36809139 CTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCATGCGCGCCGCAAGACCGTC 36809198 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| ||||||| || | || || || ||||| | | | || || ||||| Sbjct 36809199 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACGCTCTACGGCTTTGG 36809257 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||| | | ||||| || ||||| Sbjct 4999859 CTCCGGGACAACATCCAGGGCATCACGAAGCCGGCGATCAGGAGGCTGGCGCGGCGTGGC 4999918 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 4999919 GGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 4999978 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 4999979 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 5000038 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || || || Sbjct 5000039 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGACG 5000079 >seq3 Length=59935730 Score = 129 bits (142), Expect = 9e-26 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || ||||||||||| || || Sbjct 52968965 CGCGAAGCGGCACCGCAAGGTTCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCAAT 52968906 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || | ||||||| |||| Sbjct 52968905 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTATGAGGAGAC 52968846 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| || || Sbjct 52968845 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 52968786 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||| ||||| |||||| ||||||| |||| || || | || || || || Sbjct 52968785 GCACGCCCGACGCAAGACCGTCACCGCCATGGACGTCGTGTACGCGCTCAAGCGCCAGGG 52968726 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | ||||| || || Sbjct 52968725 CCGCACCCTCTATGGCTTCGG 52968705 >seq2 Length=59384932 Score = 129 bits (142), Expect = 9e-26 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| | | || Sbjct 20564337 CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTGGCGAGGAGGGGC 20564396 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 20564397 GGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTC 20564456 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| |||||||| ||| Sbjct 20564457 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCGCGCCGTAAGACCGTC 20564516 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 20564517 ACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCG 20564557 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | ||| || || ||||| || || ||||||||||| || || Sbjct 20278889 CGCCAAGCGCCACCGGAAGGTTCTCCGCGACAACATTCAGGGCATCACCAAGCCGGCGAT 20278830 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 20278829 CCGGCGCCTGGCGAGGAGAGGCGGCGTGAAGCGAATCTCCGGGCTCATCTACGAGGAGAC 20278770 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 20278769 CCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 20278710 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| ||||||| || | || || || || Sbjct 20278709 GCACGCACGCCGCAAGACCGTCACTGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGG 20278650 Query 16672 CCG 16674 ||| Sbjct 20278649 CCG 20278647 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| | | || Sbjct 20557317 CTACGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTGGCGAGGAGGGGC 20557376 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 20557377 GGCGTGAAGCGCATCTCCGGGCTAATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTC 20557436 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || | ||| ||||||||||| || ||||| ||| Sbjct 20557437 CTCGAGAACGTCATCCGCGACGCCGTTACCTACACCGAGCACGCCCGCCGCAAGACCGTC 20557496 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || | || || || ||||| Sbjct 20557497 ACCGCCATGGACGTTGTCTACGCCCTCAAGCGCCAGGGCCG 20557537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075174399404