Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 >seq1 Length=75119905 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 ||| || ||||||| || | ||| || | ||| |||| | ||||| |||| ||| || Sbjct 47004297 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCC 47004238 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || ||||||||| ||| | |||||||| || || ||| Sbjct 47004237 ATTGGATGTTCCATTCGTTCCACGGATATAGCTCCCAGTAGCACGAATGTTGTGAACTGA 47004178 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| ||||| || || ||| ||| | || ||| || | || |||||||| Sbjct 47004177 GACACCAATTCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTCAGAGTATCATAGAT 47004118 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 |||||| ||||||||||| ||||| || || || ||||| Sbjct 47004117 ACCCTCAATGCTATCATCTTTCATGCAAATAAGGAAGCAGCT 47004076 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 54132920 CAGGCGAAGTCGCAGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGC 54132979 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || |||||||| || ||||| || |||| ||| || || || |||||| Sbjct 54132980 CCCGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAG 54133039 Query 33424 ATTCCTTCTACTGCA-GCAAAGGC 33446 || || || || ||| || ||||| Sbjct 54133040 ATGCCCTCGAC-GCAGGCGAAGGC 54133062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946981968480