Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 3e-14 seq1 93.3 1e-13 >seq3 Length=59935730 Score = 95.1 bits (104), Expect = 3e-14 Identities = 165/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACT-TAAGAA 363665 ||||||||| | ||||| |||||| || ||||| || | ||| || || | |||| Sbjct 55061675 TGCTTTCTTATCTGCATGAAAGACGATAGTATTGAGGGAATTTATGATACTCTCTCAGAA 55061616 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 | | ||| || ||| ||| || ||||||||||| || || ||||| || | || Sbjct 55061615 T-GCGCTTCCATAAGCAAATCTGCTGGAGGAATTGGTGTCTCAATTCACAACATTAGAGC 55061557 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | ||||| ||||| |||||| ||| || ||||| | ||||||||||| | Sbjct 55061556 TACTGGG-AGTTATATTCGAGGCACAAATGGAACTTCTAATGGAATTGTTCCCATGCTAC 55061498 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| || | ||||||| | || || || || |||||||| ||| | ||||| Sbjct 55061497 GTGTTTTCAATGATACTGCACGCTATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 55061443 >seq1 Length=75119905 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/185 (71%), Gaps = 8/185 (4%) Strand=Plus/Plus Query 371100 GCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGT 371159 ||||||||| ||| ||| ||||| |||||| || |||| || ||||||||||| ||| Sbjct 10562060 GCACCATGAGCAATCATGCAATCCCGCTCCATTTCTCCAAAACGAAGACCACCATCACGT 10562119 Query 371160 GACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCG----GTTGCGTGC 371215 || || || |||| |||| | || |||| ||| | ||| || | | ||| Sbjct 10562120 GAGCGCCCCTCTGCTGGCTGCCTGGTCAGTATCTGGACAGGACCACGACCTCTAGAGTGA 10562179 Query 371216 ATGTGACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAAT 371275 || |||||| | |||||||||||||| ||||| |||||| ||| | | ||||| Sbjct 10562180 AT----TTTGTCATCCACCATGTGCTTGAGCCGCTGGTAATAAGTGGGACCTAGGAAAAT 10562235 Query 371276 CATAG 371280 ||||| Sbjct 10562236 CATAG 10562240 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| |||||||||| ||| || || ||| | |||||| | || | Sbjct 47004094 ATGAAAGATGATAGCATTGAGGGTATCTATGATACTCTGAAGGAATGTGCTGTCATCAGC 47004153 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || ||||||||||| || | ||||| ||||||| || | || || || Sbjct 47004154 AAATCTGCTGGAGGAATTGGTGTCTCAGTTCACAACATTCGTGCTACTG-GGAGCTATAT 47004212 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || || ||| || |||||| | ||||| ||| | ||||| || | |||| Sbjct 47004213 CCGTGGAACGAATGGAACATCCAATGGGATTGTTCCTATGTTACGTGTTTTCAATGATAC 47004272 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || |||||||| ||| | |||||| Sbjct 47004273 TGCTCGTTATGTAGATCAAGGTGGAGGCAAGAG-AAAGGG 47004311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353132421896