Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 116 5e-21 seq3 84.2 3e-11 >seq1 Length=75119905 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||||| || | ||| || | ||| |||| | ||||| |||| ||| || Sbjct 47004297 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCC 47004238 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||||||||| ||||| || || ||||||||| ||| | |||||||| || || ||| Sbjct 47004237 ATTGGATGTTCCATTCGTTCCACGGATATAGCTCCCAGTAGCACGAATGTTGTGAACTGA 47004178 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| ||| | || ||| || | ||||||||||| Sbjct 47004177 GACACCAATTCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTCAGAGTATCATAGAT 47004118 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| || |||||||| ||||| || || || ||||| Sbjct 47004117 ACCCTCAATGCTATCATCTTTCATGCAAATAAGGAAGCAGCT 47004076 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | ||| || ||||| ||||| ||||| | || | |||| | Sbjct 47003978 GTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTGAACCAACGCTGGGACATCAGATGG 47003919 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || || || ||||| || || | ||| || || ||||||| || | |||||| Sbjct 47003918 TATGTTCTGATGGCAGAGTCAATGTCATCCTTG-TGTATCCCTACTGATACTCTCATTAA 47003860 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||||||| ||||||||||||| | | ||||| | ||| || | |||| Sbjct 47003859 CATGTGCTGTGGTCTTTCAACGACAATCCCACCAAGCTTCAAGAGGTAAGACCTCTCCAG 47003800 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||| || ||||| || |||| || |||||| | |||||||| || Sbjct 47003799 AGTCTTGAAACCGAAGTAGTCATAATCAAAGTCCCTATCGTAAATTAT 47003752 >seq3 Length=59935730 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || || || | ||| || ||||| ||||||||||| | || | | | | Sbjct 55061777 GTGCCAGCGTTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGGGACATCATGTGG 55061836 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||||| | | ||| || || ||||| | ||| || ||||| || | || | |||||| Sbjct 55061837 TACGTTTTCACAGCAGACTCGATATCATCCTTG-TGTATTCCAACAGAAACTCTCATTAA 55061895 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||| ||||| || ||||| || | ||| | ||||||||| || || | || | Sbjct 55061896 CATATGCTGTGGCCTTTCCACAACCTTTCCACCAACTTTCAACAAATAAGACCTCTCAAG 55061955 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 || |||||||||||||| | ||| |||||||| || ||||| || Sbjct 55061956 CGTCTTAAAACCAAAATAATCGTAGTCAAAGTCTCTGTCATAAATTAT 55062003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631778228800