Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 100 3e-16 seq1 100 3e-16 seq4 95.1 1e-14 seq2 84.2 2e-11 >seq3 Length=59935730 Score = 100 bits (110), Expect = 3e-16 Identities = 86/103 (83%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 55969317 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 55969258 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||||||||||||||||| ||||| | ||||| ||| ||||| Sbjct 55969257 GTGGGTTCGAACCCCACTTCTGAC-ATTTATT-TTGTTATTTT 55969217 >seq1 Length=75119905 Score = 100 bits (110), Expect = 3e-16 Identities = 76/89 (85%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 32353522 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 32353581 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||||||||||| ||||||| || Sbjct 32353582 GTGGGTTCGAACCCCACTTCTGACAACTT 32353610 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/93 (84%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 72047408 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 72047349 Query 126323 GTGGGTTCGAACCCCACACCTGACA-AATTATT 126354 |||||||| |||||||| |||||| || |||| Sbjct 72047348 GTGGGTTCAAACCCCACTTCTGACAGAAATATT 72047316 >seq4 Length=48772488 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 31351121 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGCG 31351180 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||| |||||| Sbjct 31351181 TGGGTTCGAACCCCACTTCTGACA 31351204 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 47866351 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 47866292 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| |||||||| ||||||| Sbjct 47866291 GTGGGTTCAAACCCCACTTCTGACAA 47866266 >seq2 Length=59384932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | ||| ||||| || ||||||| Sbjct 21689003 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCT-GTTCCGAAAGG-GCGTGGG 21688946 Query 126328 TTCGAACCCCACACCTGACAAAT 126350 ||| || |||||| ||| ||||| Sbjct 21688945 TTCAAATCCCACAGCTGTCAAAT 21688923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860605098720