Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 179 8e-40 seq4 89.7 1e-12 seq3 89.7 1e-12 seq2 89.7 1e-12 >seq1 Length=75119905 Score = 179 bits (198), Expect = 8e-40 Identities = 406/607 (67%), Gaps = 4/607 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||||||||| | ||| |||| ||| ||||| |||||||| ||||||| ||||||||| Sbjct 42406461 TCGAAGAAATTGGTCTTTCCCTGCAGGGAGATCAGCTCCATCCAGTCGAATGGGTTTGTG 42406402 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || |||||| ||| ||| || || | || | |||||| || || ||||| | Sbjct 42406401 GCGTTGTACATCTTCTTGCAGCCCAGCGCCATGAGCAGGCGGTCCGCGACGAACTCGATG 42406342 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || || ||||||||| | | | ||||| | || || |||| Sbjct 42406341 TACTGGCTCATAAGGTCGCCGTTCATGCCCACGAGAGCGCAAGGGAGCGCGTCGCAGACA 42406282 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||| | ||| || |||| || || | || || | || ||| | |||| Sbjct 42406281 AACTCCCTCTCGATGTCAACGGCGTCGCCGACGATCTCACGGACGCGTGACTCGTCCAGC 42406222 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862 ||| || || | ||| ||||| | |||| | |||||| || |||||||| Sbjct 42406221 TTGCTCCGGAGGATGTCGTAGAGGAGGCAGGCAAAGTCGCAGTGCAGGCCTTCGTCGCGG 42406162 Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922 ||| | ||||||||| | | ||||| ||||| | || || ||| ||||||||||| Sbjct 42406161 GAGATAAGCTCGTTGGAGAAAGTTAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAG 42406102 Query 251923 ATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGC 251982 || ||||| ||||| || ||||| | | |||||||| || | | || || |||||| Sbjct 42406101 ATGGCGCAGAAGGAGCCCGAGAAGAATATCCCCTCGACGCAGGCGAAGGCGACCAGGCGC 42406042 Query 251983 TCAGCAAACGACTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGCCTTCTTTCCAA 252040 || ||||| || | || || | | | | || |||||| | ||||| | | Sbjct 42406041 TCGGCAAAGCGCTCG-CCGCCGTCGATCCAGCGCATG-GCCCATTCGGCCTTGCGGCGCA 42405984 Query 252041 CCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATGA 252100 | |||||||| || |||| || || ||| || | |||| | || ||| |||| Sbjct 42405983 CGGCGGGGATGGTGTCGACGGCGCGGAAAAGACGGTCCTTCTCGACGTCCTCCCGGATGT 42405924 Query 252101 GCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAAG 252160 | || | || || ||||||||||| || |||||| ||| || |||||| | Sbjct 42405923 AGGTCTCGATAAGCAGGGAGTACATCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGC 42405864 Query 252161 CATAGAA 252167 | ||||| Sbjct 42405863 CGTAGAA 42405857 Score = 168 bits (186), Expect = 1e-36 Identities = 536/820 (65%), Gaps = 22/820 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| |||||||| ||||||| ||||| | Sbjct 54132653 TCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTTGACG 54132712 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || |||||| |||| || || || || | |||||| || || ||||| | Sbjct 54132713 GCGTTGTACATCTTGCTGCACCCCAGAGCCGTGAGCAGGCGGTCGGCGACGAACTCGATG 54132772 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||| ||| | | ||||||||| | | ||| || | || || |||||| Sbjct 54132773 TACTGGCCCATGAGTCCGGCGTTCATGCCGACGAGGGCACATGGCAGAGCGTCGCAGATG 54132832 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||| | ||| || |||| || || | || || | || | | | ||| Sbjct 54132833 AACTCCCTCTCGATGTCAACGGCGTCGGCGACGATCTCGCGGACGCGGGACTCCTCGAGC 54132892 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862 ||| | || | ||| ||||| | | || | |||||| ||||||||||| Sbjct 54132893 TTGCCGTTGAGGAGTTCGTAGAGGAGGCAGGCGAAGTCGCAGTGCAGCCCCTCGTCGCGC 54132952 Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922 ||||| ||||||||| | || || ||||| | ||||| ||| ||||||||||| Sbjct 54132953 GAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACCACGCTTCTTGAGCCAGAAG 54133012 Query 251923 ATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGC 251982 || ||||| ||||| || ||||| | | |||||||| || | | || || |||||| Sbjct 54133013 ATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCGACGAGGCGC 54133072 Query 251983 TCAGCAAACGACTTG--TCCTGCGA-CAAGAACTTCTGTGCCCATGCTGCCTTCTTTCCA 252039 || || || || | ||| ||| | || | | | ||| | ||||| | Sbjct 54133073 TCGGCGAAGCGCTCGCCGCCTTCGATCCAGCGCAT---GGACCAGACGGCCTTGCGGCGG 54133129 Query 252040 ACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATG 252099 || ||||||| || |||| || ||||| || | |||||| |||| |||| Sbjct 54133130 ACGGCGGGGACGGTGTCGACGGCGCGGAAGAGGCGGTCCTTCTCGGCGGCGTCGCGGATG 54133189 Query 252100 AGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAA 252159 | || ||||| || |||||||||||||| |||||| ||| || |||||| | Sbjct 54133190 TAGGTCTCGAGCAGCAGGGAGTACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAG 54133249 Query 252160 GCATAGAATAGACGCGCGGAAGGGTCGGTGACTT--CCGT-GGA---AAAGTTGTTTGCA 252213 | |||| | |||||| | |||| || | ||| ||| || | || Sbjct 54133250 CCGTAGA----AGGCGCGG--GCCTCGGCCACCTGCACGTCGGACATGAACCGGGAGGCG 54133303 Query 252214 ATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAG 252273 | |||||| | ||| ||||| ||| | | || |||||| | || | | ||||||| Sbjct 54133304 AGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGAGATGAAG 54133363 Query 252274 TGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG--AA 252331 || ||||| ||| | |||| | || ||||| | |||| || ||||| | Sbjct 54133364 TGGCGCTCGTCGGGGGAGAGCGTCTCGTCCCAGTGGCGCGCGTCC-GA-GGAGAGGTCCA 54133421 Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTA 252371 | || || |||||||||| | | ||||||||||||||| Sbjct 54133422 CCTCCTCGGCCGTCCAGAAGGACGCCACCGCCTTCTTGTA 54133461 >seq4 Length=48772488 Score = 89.7 bits (98), Expect = 1e-12 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3028871 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3028930 Query 142563 CCCCACATCGGGCAGAAGT 142581 |||||| |||| ||||| Sbjct 3028931 CCCCACGGTGGGC-GAAGT 3028948 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3522318 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3522377 Query 142563 CCCCAC 142568 |||||| Sbjct 3522378 CCCCAC 3522383 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8597733 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8597674 Query 142563 CCCCAC 142568 |||||| Sbjct 8597673 CCCCAC 8597668 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 33927705 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 33927646 Query 142563 CCCCAC 142568 |||||| Sbjct 33927645 CCCCAC 33927640 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 34600430 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 34600489 Query 142563 CCCCAC 142568 |||||| Sbjct 34600490 CCCCAC 34600495 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 34902151 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 34902210 Query 142564 CCCAC 142568 ||||| Sbjct 34902211 CCCAC 34902215 >seq3 Length=59935730 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 28949039 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 28948980 Query 142562 GCCCCAC 142568 ||||||| Sbjct 28948979 GCCCCAC 28948973 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 38157367 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 38157426 Query 142562 GCCCCAC 142568 ||||||| Sbjct 38157427 GCCCCAC 38157433 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 14052877 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 14052936 Query 142563 CCCCAC 142568 |||||| Sbjct 14052937 CCCCAC 14052942 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 14055148 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 14055207 Query 142563 CCCCAC 142568 |||||| Sbjct 14055208 CCCCAC 14055213 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 37958590 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 37958649 Query 142564 CCCAC 142568 ||||| Sbjct 37958650 CCCAC 37958654 >seq2 Length=59384932 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 53530223 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 53530282 Query 142562 GCCCCAC 142568 ||||||| Sbjct 53530283 GCCCCAC 53530289 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 59302611 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 59302670 Query 142563 CCCCACATCGGGCA 142576 |||||| ||||| Sbjct 59302671 CCCCACGGTGGGCA 59302684 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 16670910 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16670969 Query 142563 CCCCAC 142568 |||||| Sbjct 16670970 CCCCAC 16670975 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 17117594 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17117653 Query 142563 CCCCAC 142568 |||||| Sbjct 17117654 CCCCAC 17117659 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 27488012 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 27487953 Query 142563 CCCCAC 142568 |||||| Sbjct 27487952 CCCCAC 27487947 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 48927054 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 48927113 Query 142563 CCCCAC 142568 |||||| Sbjct 48927114 CCCCAC 48927119 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 49686686 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 49686745 Query 142563 CCCCAC 142568 |||||| Sbjct 49686746 CCCCAC 49686751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836431263548