Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 4e-13 >seq3 Length=59935730 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| ||| | || || || ||||| || |||| || | | Sbjct 53307382 ATGCAAATCTTTGTTAAGACACTTACAGGGAAGACCATAACTCTGGAGGTCGAGAGCTCT 53307323 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || | ||| ||| ||| ||||| ||||| | ||||| || Sbjct 53307322 GACACCATTGACAATGTGAAGGCAAAGATTCAGGATAAGGAGGGCATCCCACCTG---AC 53307266 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| ||||||||||| || || || || || ||| || |||| |||||| Sbjct 53307265 CAGCAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACATTGGCTGATTAC 53307206 Query 22011 AATATTCAGAAGGAATCTACTCTTCA 22036 ||||| |||||||| ||||||||||| Sbjct 53307205 AATATCCAGAAGGAGTCTACTCTTCA 53307180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124677789912