Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq1 104 2e-17 >seq3 Length=59935730 Score = 104 bits (114), Expect = 2e-17 Identities = 142/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| ||||| ||||| || || || ||| ||| ||||| | || || Sbjct 13692779 GTAGACTCTTTCTGAATATTGTAGTCCGCCAAGGTGCGACCATCCTCAAGCTACTTCCCG 13692720 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||||||||||||||| || || || ||| ||| || Sbjct 13692719 GCGAAGATAAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGAATTTTTGCCTTC 13692660 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | || ||||| || | ||| | || ||||| || || || Sbjct 13692659 ACATTATCGATCGTGTCAGATGACTCGACCTCAAGGGTAATTGTCTTGCCAGTGAG-GTC 13692601 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 13692600 TTCACAAAAATCTGCAT 13692584 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || || | || | || || || || ||||||||||| || Sbjct 2682151 ATACCACCACGCAGACGCAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCA 2682210 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||| || || || || |||||| ||||||||||||| |||||||| Sbjct 2682211 GCGAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGT 2682270 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || || || ||||| || | | || | |||||| | || || Sbjct 2682271 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGACGACTCA 2682330 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| ||| || ||||| |||||||| Sbjct 2682331 ACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 2682380 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || |||||||||||||| || || ||| | || | ||| ||||| || || || Sbjct 13693007 GTGGACTCTTTTTGAATGTTATAGTCTGCTAAG-GTGTGCCCATCCTCAAGCTGCTTCCC 13692949 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||| ||||| ||||| || || ||||| || ||||| ||||||| || Sbjct 13692948 AGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTTGCCTT 13692889 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||||| | ||||| || |||| || | || ||||| || || || Sbjct 13692888 GACATTATCTATCGTGTCAGAAGATTCAACCTCCAAAGTGATGGTCTTGCCAGTAAGGGT 13692829 Query 114365 TTTTACAAAAATCTGCATG 114383 || ||||||||||||||| Sbjct 13692828 CTTCACAAAAATCTGCATG 13692810 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GC 114213 ||| ||||| || | || || | ||| | || || || ||||| ||||||||||| || Sbjct 53306927 ACCACCACGAAGGCGCAGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAATCTGC 53306986 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | | ||||| ||| || || || || || || ||||||| | ||| || ||||||| Sbjct 53306987 T-AAGGTACGCCCATCCTCCAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGAG 53307045 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| || || ||||| |||||| || | | |||| |||||| | | || | Sbjct 53307046 GAATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTATCAATGGTGTCAGAGCTCTCCA 53307105 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || | || || || |||| || || ||||| || ||||| Sbjct 53307106 CCTCAAGCGTGATGGTCTTTCCAGTCAATGTCTTGACAAAGATTTGCAT 53307154 >seq1 Length=75119905 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | ||| | || | || || | ||| || ||||||||||| Sbjct 27881035 ATGCCACCACGTAGGCGAAGAACAAGGTGGAGGGTGGACTATTTCTGGATGTTGTAATCC 27881094 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| || || || || |||||| ||||||| ||||| |||||||| Sbjct 27881095 GCGAGAGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGG 27881154 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || | ||| || ||||| |||||| || | | || | ||||||| || ||| Sbjct 27881155 GGGAGGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATCGTGTCGGAAGACTCG 27881214 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | | ||| | || |||||||| ||||| || ||||| |||||||| Sbjct 27881215 ACCTAGAGGGTAATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 27881264 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || |||| || | || | || || || || || |||||||| ||| Sbjct 28209624 ATGCCACCACGGAGCCTCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 28209565 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || ||||| || || ||||| ||||||| ||||| ||||| ||| Sbjct 28209564 GCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGA 28209505 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| |||||| || | | || | ||||||| || ||| Sbjct 28209504 GGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGACGACTCG 28209445 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | |||||||| || || || || ||||| |||||||| Sbjct 28209444 ACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 28209395 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || ||||| |||||| || || || ||| Sbjct 28416232 GTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGGCCATCTTCGAGCTGCTTGCCA 28416173 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| |||||||| |||||||| || ||||| ||||| || Sbjct 28416172 GCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTG 28416113 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | || || || || | ||| | || ||||| || || || Sbjct 28416112 ACATTGTCAATTGTGTCCGAAGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 28416053 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 28416052 TTGACAAAGATCTGCATG 28416035 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || ||||||||||| || || || ||| ||||| ||||| ||| Sbjct 27893849 GTGGATTCTTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATCCTCAAGCTGTTTGCCA 27893908 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || ||||| |||||||| ||||| || || ||||| ||||| || Sbjct 27893909 GCAAAGATTAGGCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTCGCCTTC 27893968 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | || ||||| |||| || | || ||||| |||| || Sbjct 27893969 ACATTATCGATTGTGTCAGACGACTCGACCTCCAGAGTAATGGTCTTGCCTGTCAAGGTC 27894028 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| || |||||| Sbjct 27894029 TTGACAAAGATTTGCATG 27894046 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| || || || ||| || || || || || Sbjct 27894305 GTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATCCTCCAGCTGCTTCCCG 27894364 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || ||||| || ||||| |||||| || Sbjct 27894365 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 27894424 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | || || | || ||||| || | ||| | || |||||||| || || Sbjct 27894425 ACATTGTCGATCGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 27894484 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 27894485 TTCACAAAGATCTGCAT 27894501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || |||||||||||||| | || || ||| ||||| || |||||| Sbjct 28210503 GTGGACTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCA 28210444 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| ||||| ||||| || || ||||| || ||||| |||||| || Sbjct 28210443 GCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTC 28210384 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | ||||| || |||| || | || || || |||| || Sbjct 28210383 ACGTTGTCAATGGTGTCCGAAGATTCAACCTCCAGTGTGATGGTCTTCCCTGTCAACGTC 28210324 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 28210323 TTAACGAAGATCTGCAT 28210307 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || ||| ||||| || |||||| Sbjct 28416460 GTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCA 28416401 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | ||||||||||| ||||| || || |||||||| ||||| ||||| || Sbjct 28416400 GCGAATATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 28416341 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | || || || || | || | || ||||| || || || Sbjct 28416340 ACATTGTCAATAGTGTCAGATGACTCAACTTCAAGCGTGATGGTCTTGCCTGTGAGGGTC 28416281 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 28416280 TTCACGAAGATCTGCATG 28416263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134256629136