Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 398 1e-105 >seq1 Length=75119905 Score = 398 bits (440), Expect = 1e-105 Identities = 621/873 (71%), Gaps = 25/873 (3%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| | ||| | | |||||| | |||||||||||| | ||| |||||| || Sbjct 54133489 GATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGC 54133430 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGA---GTCACTGTCTGAGAACGA 42400 ||||||| | ||||| || |||| || | |||||| | | || || |||| Sbjct 54133429 CGAGGAGGTGGACCTCTCCTCGGACGCGCGCCACTGGGACGAGACGCTCTCCCCCGACGA 54133370 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 ||| || || | || ||||||||||||||||| |||||||| || || Sbjct 54133369 GCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGA 54133310 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGG 42520 |||||| ||| || |||||||| || |||||| ||||| ||| ||||||||| Sbjct 54133309 GAACCTCGCCTCCCGGTTCATGTCCGACGTGCAGGTGGCCGAGGCCCGCGCCTTCTACGG 54133250 Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTA 42580 ||||||||| ||||| |||||| | ||||| ||| ||||| || |||||| | || || Sbjct 54133249 CTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCCCTGCTGCTCGAGACCTA 54133190 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 ||||| || ||| |||| || | || ||| ||| | || || | ||| | | Sbjct 54133189 CATCCGCGACGCCGCCGAGAAGGACCGCCTCTTCCGCGCCGTCGACACCGTCCCCGCCGT 54133130 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCG 42699 | ||||| | |||| | | ||||||||| | ||| ||| |||| || Sbjct 54133129 CCGCCGCAAGGCCGTCTGGTCCATGCGCTGGATCGAAGGCGGCGAGCGC----TTCGCCG 54133074 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 || | || || ||||| || ||||||||||||||||||||||||| ||||| | ||| Sbjct 54133073 AGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCA 54133014 Query 42760 TCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 |||||||||||||| || ||| || ||||| || ||||||||||| ||||| |||||| Sbjct 54133013 TCTTCTGGCTCAAGAAGCGTGGTCTC-ATGCCGGGGCTCACCTTCTCCAACGAGCTCATC 54132955 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGG 42878 | |||||||||||||| | ||||| ||||||||||| | ||| | ||||| Sbjct 54132954 TCGCGCGACGAGGGGCTGCACTGCGACTTCGCCTGCCTCCTCT--ACGA-ACTCCTCAAC 54132898 Query 42879 CACAAGCCCTCGAAGGAG---CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAG 42935 |||| |||| ||||| || ||||| | ||| || | || ||||| || |||||| Sbjct 54132897 GGCAAG--CTCG-AGGAGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTTGACATCGAG 54132841 Query 42936 AAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACCTCAT 42994 | ||||||| || | | ||||| ||| |||| |||||||||||| || ||||| Sbjct 54132840 AGGGAGTTCATCTGCGACGCTCTGCCATGTG-CCCTCGTCGGCATGAACGCCGGACTCAT 54132782 Query 42995 GTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCT 43054 | || |||||||| ||| ||||||||||| || || |||| |||| | Sbjct 54132781 GGGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCACGGCTCTGGGGTGCAGCAAGAT 54132722 Query 43055 CTACAACACGCCGT--GCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACC 43112 |||| ||||||| ||| ||||||| |||||| ||||||| || ||||||||||| Sbjct 54132721 GTACA--ACGCCGTCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACC 54132664 Query 43113 AACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||| |||||||||||||||| |||||||||| Sbjct 54132663 AACTTCTTCGAGAAGCGCGTCGGCGACTACCAG 54132631 Score = 313 bits (346), Expect = 5e-80 Identities = 584/843 (69%), Gaps = 21/843 (2%) Strand=Plus/Plus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | ||| |||||| || |||||| | ||||| || ||| || Sbjct 42405653 TACAAGAAGGCGGTGGCGTCCTTCTGGACGGCGGAGGAGGTGGACCTCTCCTCCGACGCG 42405712 Query 42372 GCCGGCTGGGAGTCA---CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | |||||| | ||||| | |||| ||| || || | || ||| Sbjct 42405713 CGCCACTGGGACACCACGCTGTCCAACGACGAGCGCCACTTCGTCTCCCACGTGCTCGCC 42405772 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 |||||||||||||| |||||||| ||| |||||||| || || |||||||| || Sbjct 42405773 TTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCGTCCCGGTTCATGTCCGAC 42405832 Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548 || ||| | ||||| ||| |||||||||||||||||| ||||| |||||| | ||| Sbjct 42405833 GTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 42405892 Query 42549 TCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGG 42608 |||||| ||||| || || || | || ||||||| ||| ||||||| || | Sbjct 42405893 TCTGAGATGTACTCCCTGCTTATCGAGACCTACATCCGGGAGGACGTCGAGAAGGACCGT 42405952 Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||| ||| | || || || ||| | | ||||| || ||||| | | Sbjct 42405953 CTTTTCCGCGCCGTCGACACCATCCCCGCCGTGCGCCGCAAGGCCGAATGGGCCATGCGC 42406012 Query 42669 TGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 |||||||| | ||| ||| || | |||| | ||||| ||||| || |||||| Sbjct 42406013 TGGATCGACGGCGGCGAGCGC----TTTGCCGAGCGCCTGGTCGCCTTCGCCTGCGTCGA 42406068 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGA 42786 ||| || |||||||||||| ||||| | ||||||||||||||||| || || || | Sbjct 42406069 GGGGATATTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTC-A 42406127 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACT 42846 |||| || || || ||||| ||||| || ||| | | ||||| || ||||| | |||| Sbjct 42406128 TGCCGGGCCTAACTTTCTCCAACGAGCTTATCTCCCGCGACGAAGGCCTGCACTGCGACT 42406187 Query 42847 TTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGTCCG 42904 ||||||||||||| | ||| | |||| || |||| || || || || ||||| Sbjct 42406188 TTGCCTGCCTCCTCT--ACGA-CATCCTCCGGAGCAAG--CTGGACGAGTCACGCGTCCG 42406242 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 | ||| || || ||||| || ||||||| |||||| || | |||| ||| | Sbjct 42406243 TGAGATCGTCGGCGACGCCGTTGACATCGAGAGGGAGTTTGTCTGCGACGCGCT-CCCTT 42406301 Query 42965 G-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC 43023 | | || || ||||||||| |||||| ||| || |||||||| ||| |||||| |||| Sbjct 42406302 GCGCTCTCGTGGGCATGAACGGCGACCTTATGAGCCAGTACATCGAGTTCGTCGCGGACC 42406361 Query 43024 ATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTT 43082 || || || | | |||| || | |||||| | | ||| ||||||| Sbjct 42406362 GCCTGCTCATGGC-GCTGGGCTGCAAGAAGATGTACAACGCCACAAACCCATTCGACTGG 42406420 Query 43083 ATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 |||||| ||||| || |||| |||||||| || ||||||||||| || | |||||| Sbjct 42406421 ATGGAGCTGATCTCCCTGCAGGGAAAGACCAATTTCTTCGAGAAGCGTGTTGGAGACTAC 42406480 Query 43143 CAG 43145 ||| Sbjct 42406481 CAG 42406483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338869481280