Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq3 96.9 3e-15 seq2 91.5 1e-13 >seq1 Length=75119905 Score = 109 bits (120), Expect = 4e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||||| |||||||| ||| ||||| ||| ||||||||||||||||| || Sbjct 26504421 CCACCCCTCAGCCTCAGCACCAAATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAGCT 26504362 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || |||| | || ||||||||||| || ||||| || || | ||||||||| || Sbjct 26504361 AACGTTCGCCCATCTTCCAATTGCTTTCCAGCAAAAATTAGCCTTTGCTGATCCGGGGGA 26504302 Query 34021 ACGCTCTCTTTGTCC 34035 | || |||||||||| Sbjct 26504301 ATGCCCTCTTTGTCC 26504287 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||||||||||| || ||| ||||||||| ||||||||||||||| Sbjct 27894275 CCACCCCTGAGCCTGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 27894334 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| ||||| ||||| || || || |||||||| ||| || Sbjct 27894335 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 27894394 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | || ||| |||||| || ||| ||| || | || | |||||| ||| ||| Sbjct 27894395 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTG---TCGATCGTATCAGAAGACTCG 27894451 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || ||||| || || ||||||||||| ||||| Sbjct 27894452 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 27894501 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || || | ||| ||||||||| || ||||||||||||| || Sbjct 27894056 AGGCGAAGCACAAGGTGCAAGGTGGACTCCTTCTGGATATTGTAATCTGCCAGGGTGCGA 27894115 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||| ||||| || ||||||||||| || || | || ||| Sbjct 27894116 CCGTCTTCCAGTTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTCC 27894175 Query 34030 TTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCGCATTCGACC 34086 |||||| || ||| ||| || | || | | |||| || ||| |||| Sbjct 27894176 TTGTCCTGGATCTTTGCCTTCACATTG---TCGATCGTGTCAGACGACTCGACCTCGAGT 27894232 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || || ||||||||||||||||| Sbjct 27894233 GTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATTTGCAT 27894273 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || || |||||||| ||||| ||| ||| ||||| |||||||| || ||| Sbjct 22181636 CCACCTCTGAGGCGTAGCACCAGGTGAAGTGTGGACTCTTTCTGGATGTTGTAGTCAGCC 22181577 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || |||| |||| ||||| || ||||| || ||||||||||| ||| Sbjct 22181576 AGGGTGCGGCCGTCATCCAGCTGCTTCCCTGCAAAGATGAGGCGCTGCTGGTCC 22181523 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||||| ||||||||||| || ||| |||||||| |||||||| || || Sbjct 28209849 CCACCACGCAGCCTGAGCACCAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCG 28209790 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | |||||||||||||| || ||||||||||| ||| || Sbjct 28209789 AGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGG 28209730 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| || ||| Sbjct 28209729 ATGCCCTCCTTATCC 28209715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || ||||||||||| || ||| |||||||| || ||||||||||| || || || Sbjct 28210296 AGACGAAGCACCAGATGCAGAGTGGATTCCTTCTGGATATTGTAATCTGC-AAGGGTGCG 28210238 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || || | ||||||||||| || || ||||||||||| ||| || | || ||| Sbjct 28210237 ACCATCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTC 28210178 Query 34029 TTTGTCC 34035 |||||| Sbjct 28210177 CTTGTCC 28210171 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || |||||||| || || ||| |||||||||||||||||||||||| || || || Sbjct 28210524 AGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCTGC-AAGGGTGCG 28210466 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || || | ||||| || ||||| || ||||||||||| || || | || ||| Sbjct 28210465 GCCATCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTC 28210406 Query 34029 TTTGTCC 34035 |||||| Sbjct 28210405 CTTGTCC 28210399 >seq3 Length=59935730 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||| || |||||||| ||| |||||| || |||||||||||||| || ||| Sbjct 53306937 AGGCGCAGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAATCTGCTAAGGTACGC 53306996 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| ||||| |||||||| || || | |||||||||| || | | ||| Sbjct 53306997 CCATCCTCCAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGAGGAATTCCCTCC 53307056 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 |||||| ||| || ||| | | | | | |||| || | || || | ||| Sbjct 53307057 TTGTCCTGAATCTTGGCCTTCACGTTATCAATGGTGTCAG-AGCTCTCCACCTCAAGCGT 53307115 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || ||||| || | ||| || ||||||||||||||| Sbjct 53307116 GATGGTCTTTCCAGTCAATGTCTTGACAAAGATTTGCATT 53307155 Score = 87.8 bits (96), Expect = 1e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||| || || |||||||| || || ||| ||||||||| |||||||| || || Sbjct 2681469 ACCACCTCGAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 2681528 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || || | || |||| ||||| || ||||| |||||||||||||| ||| | Sbjct 2681529 -AAGGGTGCGGCCATCCTCCAGCTGCTTTCCTGCAAAGATCAGGCGCTGCTGGTCCGGGG 2681587 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 2681588 GAATGCCCTCCTTGTCC 2681604 >seq2 Length=59384932 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| || |||||||| || |||||| ||||||||| |||||||| || || Sbjct 10639229 CCTCCCCTCAGTCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 10639288 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| ||||||||||| || || || |||||||| ||| || Sbjct 10639289 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGG 10639348 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| || ||| Sbjct 10639349 ATGCCCTCCTTATCC 10639363 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || || ||| ||||||||| |||||||| || || Sbjct 34837778 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 34837837 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || ||||||||||| ||| ||| Sbjct 34837838 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 34837897 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 34837898 ATGCCCTCCTTGTCC 34837912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || ||||||||||| ||||||||| ||||||||| |||||||| || |||| | || || Sbjct 10662510 AGACGCAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTG-CG 10662452 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||||||| ||||| || || || || || |||||||| || Sbjct 10662451 GCCATCGTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTC 10662407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062264502456