Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 140 8e-28 seq2 132 1e-25 seq3 129 1e-24 seq4 95.1 3e-14 >seq1 Length=75119905 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || || || || ||||| | ||| ||| || ||||| || |||| Sbjct 28209853 CATG-CCACCACGCAGCCTGAGCACCAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGT 28209795 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||||||| || || ||||| || | || || || || ||||| || ||||| || Sbjct 28209794 CGGCGAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCG 28209735 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || ||||||||||| ||||| ||||| || || || | || || | Sbjct 28209734 GGGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCAGAGGACT 28209675 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 28209674 CGACCTCCAGCGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 28209623 Score = 129 bits (142), Expect = 1e-24 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || || || | || || || ||||| ||||| || Sbjct 27893360 TGGCCACCACGGAGGCGGAGCACCAGGTGTAGGGTAGACTCCTTCTGGATGTTATAATCC 27893419 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || || |||||||| || || | || || || || |||||||| ||||| || ||| Sbjct 27893420 GCCAGAGTGCGTCCATCCTCAAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGG---TCT 27893476 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || |||||||| ||||| |||||||| || || | || ||| Sbjct 27893477 GGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGAAGAT 27893536 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || ||||||||||||| ||||||||| || |||||||| Sbjct 27893537 TCAACCTCCAGTGTAATGGTCTTCCCGGTCAAAGTCTTGACAAAGATCTGCAT 27893589 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | ||| || ||||| | ||| ||| || |||||||| || || || Sbjct 28210306 TCCACCGCGGAGACGAAGCACCAGATGCAGAGTGGATTCCTTCTGGATATTGTAATCTGC 28210247 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || || || | || || || |||||||| || ||||| || ||| Sbjct 28210246 AAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGG 28210187 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || |||||||| ||||| || || || || || | ||| ||| || || Sbjct 28210186 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATTGTGTCGGACGACTCAAC 28210127 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || |||| ||||| || || |||||||| Sbjct 28210126 CTCCAGGGTAATTGTCTTGCCAGTCAAGGTCTTTACAAAGATCTGCAT 28210079 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| || || || || || | ||| || |||||||| || |||| Sbjct 28416038 CATG-CCACCACGGAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGT 28415980 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || ||||| || || || | || || || |||||||| || | ||| || Sbjct 28415979 CAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCG 28415920 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| || || |||||||| || || | || || | Sbjct 28415919 GGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATGGTGTCAGAAGACT 28415860 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||||||| ||||| ||||| || |||||||| || |||||||| Sbjct 28415859 CGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 28415808 Score = 123 bits (136), Expect = 6e-23 Identities = 170/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| || || || | ||| ||| || |||||||| || | Sbjct 28210081 CATG-CCACCACGGAGGCGAAGCACCAGGTGCAAGGTGGATTCCTTCTGGATATTGTAAT 28210023 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || ||||| || || || | || || || |||||||| || ||||| || | Sbjct 28210022 CTGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGG---T 28209966 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || || || ||||||||||| || || ||||| || || || | || | Sbjct 28209965 CCGGGGGAATGCCCTCCTTATCCTGGATCTTTGCCTTCACATTGTCGATCGTGTCAGAGG 28209906 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 28209905 ACTCAACCTCCAGAGTGATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 28209851 Score = 120 bits (132), Expect = 7e-22 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| || || || || || | ||| || || ||||| || |||| Sbjct 28209625 CATG-CCACCACGGAGCCTCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 28209567 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||||||| ||||| ||||| || | || ||||| || ||||| || ||||| || | Sbjct 28209566 CGGCGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTG---GT 28209510 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || || || || || || |||||||| || || || ||||| || || | ||| || Sbjct 28209509 CTGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGACG 28209450 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || ||||| || || || || || ||||| || || |||||||| Sbjct 28209449 ACTCGACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 28209395 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || || || || || || | ||| || || ||||| || |||| Sbjct 28415582 CATG-CCACCACGCAGCCTGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGT 28415524 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || ||||| || || || | || || || |||||||| || ||||| || Sbjct 28415523 CAGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCCG 28415464 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| || || |||||||| || || | || || | Sbjct 28415463 GGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACT 28415404 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||||||| ||||| ||||| || ||||| || || |||||||| Sbjct 28415403 CGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 28415352 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || || || || | || | ||| || || ||||| || |||| Sbjct 28415810 CATG-CCACCACGCAGCCTGAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAGT 28415752 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || ||||| || || || | || || || |||||||| || ||||| || Sbjct 28415751 CAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCCG 28415692 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| || || |||||||| || || | || || | Sbjct 28415691 GGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATTGTGTCAGAGGACT 28415632 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||||||||| ||||| ||||| || |||||||| || |||||||| Sbjct 28415631 CGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 28415580 Score = 114 bits (126), Expect = 3e-20 Identities = 168/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || || || | ||| ||||| || || ||||||| Sbjct 55138327 CATG-CCACCACGCAGACGAAGGACAAGGTGCAGGGTGGACTCTTTCTGAATGTTATAGT 55138385 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || | ||||| || || | | || || || |||||||| |||||||| || | Sbjct 55138386 CTGCCAAGGTGCGCCCATCGGCGAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGG---T 55138442 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| || || || ||||| ||||||||||| |||||||| || |||| || | Sbjct 55138443 CTGGAGGAATGCCCTCCTTATCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCAGATG 55138502 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || || || ||||| || || || ||||| || ||||||||||| Sbjct 55138503 ACTCAACCTCAAGAGTAATTGTCTTGCCTGTGAGGGTCTTCACAAATATCTGCAT 55138557 Score = 111 bits (122), Expect = 4e-19 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||||||||| | || || || |||| || || || ||||| || |||| Sbjct 28416266 CATG-CCACCGCGGAGGCGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGT 28416208 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || || || || ||||| | || || || || ||||| |||||||| || | Sbjct 28416207 CAGCCAGGGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTG---GT 28416151 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || || || || |||||||| ||||| || || || || || | || | Sbjct 28416150 CCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATTGTGTCCGAAG 28416091 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| ||||| ||||| || || || |||||||| || |||||||| Sbjct 28416090 ACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 28416036 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178 |||||||| || |||||| | |||||| | | |||| ||||| |||| |||||| Sbjct 54132837 GAGTTCATCTGCGACGCTCTGCCATGTGCCCTCGTCGGCATGAACGCCGGACTCATGGGC 54132778 Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAG-TGTA 269237 || || ||||| ||||| || || || | ||||||| || || | || ||| |||| Sbjct 54132777 CAGTACATCGAGTTCGTCGCCGACCGCCTGCTCACGGCTCTGGGGTGC-AGCAAGATGTA 54132719 Query 269238 CAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTT 269297 ||| | || || |||| || ||||| || || ||||| | || ||||| ||||| Sbjct 54132718 CAACGCCGTCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTT 54132659 Query 269298 CTTCGAAAAGCGTGTCAGCGACTATCA 269324 |||||| ||||| ||| ||||||| || Sbjct 54132658 CTTCGAGAAGCGCGTCGGCGACTACCA 54132632 Score = 102 bits (112), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || || || | ||| ||| || ||||| ||||| || Sbjct 27880807 TGGCCACCACGGAGACGGAGGACCAGGTGCAGTGTGGATTCCTTCTGGATGTTATAATCC 27880866 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || || ||||| || || || | || || || || ||||| || |||| || || Sbjct 27880867 GCAAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGCTGCTGCTGG---TCC 27880923 Query 288364 GGGATT---CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| | || || ||||||||||| ||||| ||||| || || || | || ||| Sbjct 27880924 GGGGGTGTGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCGATTGTGTCAGAAGAT 27880983 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || || ||||| || |||| ||||||||||| |||||||| Sbjct 27880984 TTAACCTCTAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 27881036 >seq2 Length=59384932 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 |||| || || || || | |||| || || ||||| || ||||||||||| ||||| Sbjct 10639238 AGTCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 10639297 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 ||||| || | || || || |||||||| || ||||| || |||||| || || Sbjct 10639298 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGGATGCCCTCC 10639357 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||||||||| || || |||||||| || || | || || || || || |||||| Sbjct 10639358 TTATCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTG 10639417 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || ||||| ||||| |||||||| Sbjct 10639418 ATGGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 10639455 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || || || | ||| || || ||||| || ||||||||| Sbjct 34837778 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 34837837 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| || ||||| || ||| Sbjct 34837838 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 34837897 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || |||||||| || || | || || || || Sbjct 34837898 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 34837957 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 34837958 TCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 34838004 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || || ||||| || || || ||||| || || | ||||| || || ||| Sbjct 10671318 CCTTCCTTGTCATGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACCTCG 10671259 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 10671258 AGCGTGATCGTCTTCCCCGTCAGTGTCTTCACGAAGATCTGCAT 10671215 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || |||||||| || || || ||||| || || | || || || || ||| Sbjct 10768226 CCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCCTGCTCTCGACCTCG 10768285 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||| || ||||| ||||||||||| |||||||| Sbjct 10768286 AGCGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 10768329 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| | ||||||||||| || || | ||| || || | ||||| || || Sbjct 27262187 ATACCTTCCCTGTCCTGGATTTTGGCCTTGATGTTGTCGATGGTGTCGCTGCTCTCGACC 27262246 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 27262247 TCCAGCGTGATGGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCAT 27262293 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || |||||||| || || || ||| | || || | || || || || || Sbjct 10661828 CCTTCCTTGTCCTGGATCTTTGCCTTGACGCTGTCGATGGTGTCCCTGCTCTCGACCTCC 10661769 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct 10661768 AGCGTGATCGTCTTCCCCGTCAGCGTCTTGACGAAGATCTGCAT 10661725 >seq3 Length=59935730 Score = 129 bits (142), Expect = 1e-24 Identities = 170/233 (73%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| ||| || || ||||| || ||||| || Sbjct 2681698 CCACCACGCAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 2681757 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||||||||||||||||||||| || || ||| Sbjct 2681758 AGGGTGCGACCATCCTCCAGCTGCTTTCCTGCGAAGATCAGACGCTGCTG---GTCCGGG 2681814 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || || || || |||||||| || || |||||||| || || | || |||| Sbjct 2681815 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGCTC--- 2681871 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 2681872 TCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2681924 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| ||| || || ||||| || ||||||||| Sbjct 2681926 CCACCACGCAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 2681985 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || |||||||||||||| || || ||| Sbjct 2681986 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTG---GTCCGGG 2682042 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||||||||| || || |||||||| || || | || || || Sbjct 2682043 GGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGATGACTCC 2682102 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || |||| |||||| || || |||||||| Sbjct 2682103 ACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 2682152 Score = 125 bits (138), Expect = 2e-23 Identities = 171/236 (72%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | ||| || || || | ||| || || ||||| || ||||| Sbjct 3233905 TGACCACCACGGAGACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 3233964 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||||| ||||| || || || | || || |||||||||||||||||||| || || Sbjct 3233965 GCGAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATCAGACGCTGCTG---GTCC 3234021 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTC 288417 ||| || || || || |||||||| || || |||||||| || || | || |||| Sbjct 3234022 GGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGCTC 3234081 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| ||||| || |||||||| || |||||||| Sbjct 3234082 ---TCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 3234134 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || ||||| || | ||| || || |||| || |||||||| Sbjct 31827566 CCGCCGCGGAGCCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCGGCC 31827625 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||| || ||||| || ||| Sbjct 31827626 AGCGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGCTCCGGCGGG 31827685 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 | || || || ||||| | || || |||||||| || || | || || || || Sbjct 31827686 ACCCCCTCCTTGTCCTGCACCTTGGCCTTCACGTTCTCGATCGTGTCCGATGACTCCACC 31827745 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 31827746 TCCAGCGTGATCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCAT 31827792 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| ||| || || || || || ||||| ||| Sbjct 2682154 CCACCACGCAGACGCAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCG 2682213 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||| |||||||| || |||| Sbjct 2682214 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 2682273 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || || || ||||| || || | || ||| || || Sbjct 2682274 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGACGACTCAACC 2682333 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||| |||||| || || |||||||| Sbjct 2682334 TCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 2682380 Score = 113 bits (124), Expect = 1e-19 Identities = 170/238 (71%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | ||| || || ||||| || |||| Sbjct 3234132 CATG-CCACCACGAAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 3234190 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | ||||| ||||| || || || | || || ||||| |||||||||||||| || | Sbjct 3234191 CAGCGAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCAAAGATCAGACGCTGCTG---GT 3234247 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GC 288415 | ||| || || || || |||||||| || || |||||||| || || | || || Sbjct 3234248 CCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGC 3234307 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || | ||||| ||||| ||||| || |||||||| || |||||||| Sbjct 3234308 TC---TCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 3234362 Score = 113 bits (124), Expect = 1e-19 Identities = 170/238 (71%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | ||| || || ||||| || |||| Sbjct 3234360 CATG-CCACCACGAAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 3234418 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | ||||| ||||| || || || | || || || ||||||||||||||||| || | Sbjct 3234419 CAGCGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTG---GT 3234475 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GC 288415 | ||| || || || || |||||||| || || |||||||| || || | || || Sbjct 3234476 CCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGC 3234535 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || | ||||| ||||| ||||| || |||||||| || |||||||| Sbjct 3234536 TC---TCAACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 3234590 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| || || || | || ||||| | || || ||||||||| Sbjct 3234856 TCCTTCTGGATGTTGTAGTCCGCAAGGGTCCTGCCATCTTCAAGCTGCTTGCCTGCGAAG 3234915 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || | ||||| || || ||||||||||| || || ||||| || Sbjct 3234916 ATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTG 3234975 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || ||||| ||||| || |||| |||||| || Sbjct 3234976 TCGATGGTGTCAGATGACTCCACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACA 3235035 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 3235036 AAGATTTGCAT 3235046 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || || || | || ||||| || || | || | Sbjct 13693269 CATG-CCACCACGCAGACGAAGGACAAGGTGTAGGGTAGACTCTTTCTGAATGCTGTAAT 13693211 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || ||||| ||||| || | || || || || ||||| || ||||| || | Sbjct 13693210 CCGCCAGGGTGCGCCCGTCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCAG 13693151 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || || || || || || || || || || || | ||| || | Sbjct 13693150 GGGGGATGCCTTCCTTGTCTTGAATCTTTGCCTTGACATTGTCAATCGTATCCGATGACT 13693091 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || | || || ||||| ||||| || ||||||||||| |||||||| Sbjct 13693090 CGACCTCCAAAGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 13693039 >seq4 Length=48772488 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || || | |||| || || ||||| || |||||||| || ||||| ||||| Sbjct 34033508 AGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 34033449 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | | |||||||| || ||||| || ||||| || || || ||| Sbjct 34033448 TCCAGCTAC------GCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 34033395 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || | || || || ||||| || || | || || || || || |||||||||||| Sbjct 34033394 TGCACCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCCACCTCCAGCGTGATCGTC 34033335 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||||||||| |||||||| Sbjct 34033334 TTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 34033303 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || ||||| || | ||| || || ||||| || ||||||||| Sbjct 43546136 CCACCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 43546077 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTG 288356 || ||||| ||||| || | || || || ||||||||||||||||| || Sbjct 43546076 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTG 43546027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653976798984