Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1 170 4e-37 >seq1 Length=75119905 Score = 170 bits (188), Expect = 4e-37 Identities = 315/454 (69%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||||| | ||||| || || || | || || || ||| Sbjct 54133080 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 54133021 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| ||| | ||||| || ||| | || |||||| Sbjct 54133020 TGCGCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAACGAG 54132961 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| ||||||||||| || ||| | |||| || | || | || ||| Sbjct 54132960 CTCATCTCGCGCGACGAGGGGCTGCACTGCGACTTCGCCTGCCTCCTCTA--CGAA-CTC 54132904 Query 243469 CAGAAC---AAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 | ||| ||||| | | | || ||| | ||| || | || || ||||| | Sbjct 54132903 CTCAACGGCAAGCT-CGAGGAGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTTGACAT 54132845 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 ||| | ||| ||||| ||||||||| | ||||| || | ||||||||| | | ||| Sbjct 54132844 CGAGAGGGAGTTCATCTGCGACGCTCTGCCATGTGCCCTCGTCGGCATGAACGCCGGACT 54132785 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||||| ||||||||||| ||||| ||||||||| | ||| || || || | || | Sbjct 54132784 CATGGGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCACGGCTCTGGGGTGC-AGCA 54132726 Query 243645 AG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 || |||||||| || ||||| || | || ||||||||||| ||||| || || || | Sbjct 54132725 AGATGTACAACGCCGTCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGA 54132666 Query 243704 CTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 | ||||||||||| ||||| ||| | || || || Sbjct 54132665 CCAACTTCTTCGAGAAGCGCGTCGGCGACTACCA 54132632 Score = 147 bits (162), Expect = 5e-30 Identities = 347/521 (67%), Gaps = 6/521 (1%) Strand=Plus/Plus Query 243208 CTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAG 243267 |||||| |||| |||| | ||| || || || | |||||| ||||||| | Sbjct 42405953 CTTTTCCGCGCCGTCGACACCATCCCCGCCGTGCGCCGCAAGGCCGAATGGGCCATGCGC 42406012 Query 243268 TGGCTAGAACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGT 243327 ||| | || ||| | ||||| ||||| || ||||||| | ||||| || || Sbjct 42406013 TGGATCGACGGCGGCGAGCGCTTTGCCGAGCGCCTGGTCGCCTTCGCCTGCGTCGAGGGG 42406072 Query 243328 ATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCT 243387 || | || || || |||||||||||||| ||||| ||| || | ||||| Sbjct 42406073 ATATTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCG 42406132 Query 243388 GGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGT 243447 ||||| | | || |||||| | ||| |||||||| ||||| ||| | || | Sbjct 42406133 GGCCTAACTTTCTCCAACGAGCTTATCTCCCGCGACGAAGGCCTGCACTGCGACTTTGCC 42406192 Query 243448 GAGCTTATGTATTCAAAGCTCCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATC 243504 || | || | |||| || |||||| || | || ||| ||| | ||| Sbjct 42406193 TGCCTCCTCTACGACATCCTCCGGAGCAAGCTGGACGAGTC---ACGCGTCCGTGAGATC 42406249 Query 243505 ATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT 243564 || || || ||||| | ||| | ||| || | |||||||| | || ||| || Sbjct 42406250 GTCGGCGACGCCGTTGACATCGAGAGGGAGTTTGTCTGCGACGCGCTCCCTTGCGCTCTC 42406309 Query 243565 ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTC 243624 | ||||||||| || || ||| | ||||||||||| ||||| || |||||| | || Sbjct 42406310 GTGGGCATGAACGGCGACCTTATGAGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTC 42406369 Query 243625 ATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTC 243684 || ||||| || | |||| |||||||| ||| ||||| || | || |||||||| Sbjct 42406370 ATGGCGCTGGGCTGCAAGAAGATGTACAACGCCACAAACCCATTCGACTGGATGGAGCTG 42406429 Query 243685 ATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 || || || || || || || || |||||||| |||||||| Sbjct 42406430 ATCTCCCTGCAGGGAAAGACCAATTTCTTCGAGAAGCGTGT 42406470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879604341800