Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1 172 7e-38 >seq1 Length=75119905 Score = 172 bits (190), Expect = 7e-38 Identities = 316/454 (70%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 54132634 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 54132693 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG--GCACCCCA-ATCTGTTTGAGGAG 125874 | || || ||||| | ||| | || ||| |||||||| | | || ||| || Sbjct 54132694 CCAGTCGAACGGGTTGACGGCGTTGTACATC-TTGCTGCACCCCAGAGCCGT--GAGCAG 54132750 Query 125875 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT 125934 || || | |||| |||| ||||||| ||| | | |||||| |||| |||| Sbjct 54132751 GCGGTCGGCGACGAACTCGATGTACTGGCCCATGAGTCCGGCGTTCATGCCGACGAGGGC 54132810 Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994 |||||| || ||||| |||||||| || |||| || || ||||| || ||||| | Sbjct 54132811 ACATGGCAGAGCGTCGCAGATGAACTCCCTCTCGATGTCAACGGCGTCGGCGACGATCTC 54132870 Query 125995 GTGAATGGTGTCCACCCC-AGGT--CTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAA 126051 | | | | | | || | || | | ||| | | | || ||| || ||| || Sbjct 54132871 GCGGACGCGGGACTCCTCGAGCTTGCCGTTGAGGAGTTCGTAGAGGAGG--CA-GGCGAA 54132927 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| || |||||||| || |||||||| || || |||||| || || ||||| Sbjct 54132928 GTCGCAGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCAT 54132987 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 |||||| |||||||| | |||||| || || || || || |||||||||||||| ||||| Sbjct 54132988 GAGACCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 54133047 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || ||||| || | ||| ||||| || ||| Sbjct 54133048 GACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 54133081 Score = 159 bits (176), Expect = 4e-34 Identities = 313/453 (69%), Gaps = 10/453 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| ||||| |||||||||||||| || ||||| || | || | ||| |||||| Sbjct 42406480 GTAGTCTCCAACACGCTTCTCGAAGAAATTGGTCTTTCCCTGCAGGGAGATCAGCTCCAT 42406421 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 125876 | || |||||||| | | ||| | || | | ||| |||| | |||| || | Sbjct 42406420 CCAGTCGAATGGGTTTGTGGCGTTGTACATCTTCTTGCAGCCCAG-CGCCATGAGCAGGC 42406362 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 | |||| |||| |||| ||||||| ||| || |||||| || | ||| | Sbjct 42406361 GGTCCGCGACGAACTCGATGTACTGGCTCATAAGGTCGCCGTTCATGCCCACGAGAGCGC 42406302 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | ||||||||||| ||| ||| || |||| || || ||||| || | ||||| | Sbjct 42406301 AAGGGAGCGCGTCGCAGACAAACTCCCTCTCGATGTCAACGGCGTCGCCGACGATCTCAC 42406242 Query 125997 GAATG-GTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAAC 126052 | | | ||| | |||| | | | || | | ||| | || ||| || |||||| Sbjct 42406241 GGACGCGTGACTCGTCCAGCT-TGCTCCGGAGGATGTCGTAGAGGAGG--CA-GGCAAAG 42406186 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| || || ||||| |||||||| || || || ||||| || || |||||| Sbjct 42406185 TCGCAGTGCAGGCCTTCGTCGCGGGAGATAAGCTCGTTGGAGAAAGTTAGGCCCGGCATG 42406126 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 || || |||||||| | |||||| || || || || || ||||||||||| || ||||| Sbjct 42406125 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAATATCCCCTCG 42406066 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || ||||| || | || ||||| |||||| Sbjct 42406065 ACGCAGGCGAAGGCGACCAGGCGCTCGGCAAAG 42406033 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 ||||| ||||||||||||||||| || ||||||| ||||| || | |||||||||| | Sbjct 27734326 TCAAACCCATCCATCTCAGTCAATAGCTGATTGAGTGTTTGCTCCCTTTCATCATTCCCA 27734385 Query 10934 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | ||| | | | |||| | || || || ||||||||||| | || || || Sbjct 27734386 CCACCAATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAATACTATG 27734445 Query 10994 CACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 || || ||| | | || | ||| ||| | ||| || || | |||||| ||||| Sbjct 27734446 CAGGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACCCGGGAGGCACCAACACC 27734504 Query 11053 CACAAACATTTCCACAAA 11070 |||||||| |||||||| Sbjct 27734505 AACAAACATCTCCACAAA 27734522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353390926240