Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq3 91.5 1e-13 >seq1 Length=75119905 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| |||||||| | | ||| |||||||| || |||||||| |||||||| ||||| Sbjct 28210308 ATTCCACCGCGGAGACGAAGCACCAGATGCAGAGTGGATTCCTTCTGGATATTGTAATCT 28210249 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || || ||| | || | || ||||||||||| Sbjct 28210248 GCAAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGT 28210189 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || |||| || | |||||||| ||||| Sbjct 28210188 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATTGTGTCGGACGACTCA 28210129 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || ||||| || | || |||||||| || ||||| Sbjct 28210128 ACCTCCAGGGTAATTGTCTTGCCAGTCAAGGTCTTTACAAAGATCTGCAT 28210079 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||||| ||| || || || || || ||||||||||| || || || Sbjct 28416037 ATGCCACCACGGAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCA 28415978 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | || | | ||||||||||| Sbjct 28415977 GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGG 28415918 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || ||| || | || | || | |||||| |||||||| Sbjct 28415917 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCA-CGTTGTCGATGGTGTCAGAAGACTC 28415859 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || |||||||| || || || ||||| || ||||| Sbjct 28415858 GACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 28415808 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | |||||| | ||| ||||| || || || ||||| ||||| || ||||| Sbjct 27894272 ATGCCACCCCTGAGCCTGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCT 27894331 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| || || || ||| | || | || ||||||||||| Sbjct 27894332 GCCAGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCCGGG 27894391 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || ||| |||| || | || || ||||||||| Sbjct 27894392 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATCGTATCAGAAGACTCG 27894451 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || |||||||| || || || ||||| || |||||| Sbjct 27894452 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC 27894502 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || |||| || |||||||| |||||||| ||||| Sbjct 28210080 ATGCCACCACGGAGGCGAAGCACCAGGTGCAAGGTGGATTCCTTCTGGATATTGTAATCT 28210021 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | || | || ||||||||||| Sbjct 28210020 GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGG 28209961 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || ||||| || || ||| || | || | ||||| || ||||| Sbjct 28209960 GGAATGCCCTCCTTATCCTGGATCTTTGCCTTCACATTGTCGATCGTGTCAGAGGACTCA 28209901 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | || ||||||||||| || || || || || ||||| Sbjct 28209900 ACCTCCAGAGTGATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 28209851 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| || || || ||| | || | || ||||||||||| || | ||| || || Sbjct 27881109 ATCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGGAGGCCCTCCTT 27881168 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || || || ||| |||| || | ||||||||||||||||| | ||| |||| Sbjct 27881169 GTCCTGGATCTTTGACTTGACATTGTCGATCGTGTCGGAAGACTCGACCTAGAGGGTAAT 27881228 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || |||||||| ||||| || ||||| || |||||| Sbjct 27881229 GGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATC 27881265 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 138380 GCACGCAAAGTTGGTGTGTAAACCTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGTCAG 138439 ||| ||||||| | ||| | ||||||||||| |||||||| |||||| || || || Sbjct 42406195 GCAGGCAAAGTCGCAGTGCAGGCCTTCGTCGCGGGAGATAAGCTCGTTGGAGAAAGTTAG 42406136 Query 138440 CCCCGGCATGACGCCTTTGGTCTTGATGTAAAAGATGGCCGCGAAACTGCCCGaaaaaaa 138499 |||||||||| ||| |||||| | |||||||| ||| |||||| || || Sbjct 42406135 GCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAA 42406076 Query 138500 aaCGCCTTCGACAATAGCGAAAGCCACCATGCGCACGGC 138538 | || ||||| ||||| || |||| |||| |||| Sbjct 42406075 TATCCCCTCGACGCAGGCGAAGGCGACCAGGCGCTCGGC 42406037 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || ||||| || ||||| || ||||| || ||||| Sbjct 27893816 ATGCCACCACGGAGGCGAAGCACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAATCT 27893875 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||||| || || | || | || ||||||||||| Sbjct 27893876 GCCAGGGTGCGGCCATCCTCAAGCTGTTTGCCAGCAAAGATTAGGCGCTGCTGGTCCGGT 27893935 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || || || || || || | || | ||||| || |||||| Sbjct 27893936 GGAATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTATCGATTGTGTCAGACGACTCG 27893995 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || ||||| || | || || ||||| |||||||| Sbjct 27893996 ACCTCCAGAGTAATGGTCTTGCCTGTCAAGGTCTTGACAAAGATTTGCAT 27894045 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| | ||| ||||| || || |||||||| ||||| || || ||| Sbjct 28209852 ATGCCACCACGCAGCCTGAGCACCAGATGGAGTGTGGATTCCTTCTGGATGTTGTAGTCG 28209793 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || || || || | || | || ||||||||||| Sbjct 28209792 GCGAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGG 28209733 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || ||||| || || || || | || | ||||| || |||||| Sbjct 28209732 GGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCAGAGGACTCG 28209673 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || |||||||| || || || || || || ||||| Sbjct 28209672 ACCTCCAGCGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 28209623 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| | ||| || || || || || ||||| ||||| || || || Sbjct 28415581 ATGCCACCACGCAGCCTGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCA 28415522 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | || | || ||||||||||| Sbjct 28415521 GCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCCGGG 28415462 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || | || | || | ||||| || ||||| Sbjct 28415461 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGAGGACTC 28415403 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| || | || |||||||| || || || ||||| || |||||| Sbjct 28415402 GACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC 28415351 >seq3 Length=59935730 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || ||||| || || || || || ||||| || || | ||| | ||| || Sbjct 13692791 ACAAGGTGCAGGGTAGACTCTTTCTGAATATTGTAGTCCGCCAAGGTGCGACCATCCTCA 13692732 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | | || || ||| | || | || ||||||||||| |||||||| || ||||||||| Sbjct 13692731 AGCTACTTCCCGGCGAAGATAAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGA 13692672 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 |||||| || | || | ||||| || |||||||| || || |||| || ||| Sbjct 13692671 ATTTTTGCCTTCACATTATCGATCGTGTCAGATGACTCGACCTCAAGGGTAATTGTCTTG 13692612 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || |||||||| |||||| Sbjct 13692611 CCAGTGAG-GTCTTCACAAAAATCTGCATC 13692583 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || || || || || || ||||| ||||| || || ||| Sbjct 2681923 ATACCACCACGCAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 2681982 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| || || || || | |||| || ||||||||||| Sbjct 2681983 GCGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGG 2682042 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || ||||| || || || || | || | || | |||||| || ||||| Sbjct 2682043 GGAATGCCCTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGATGACTC 2682101 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || | ||| || ||||| || ||||| Sbjct 2682102 CACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 2682152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || || ||||| ||||| || || || | Sbjct 3233908 CCACCACGGAGACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 3233967 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| || || |||||| | |||| || ||||||||||| ||| Sbjct 3233968 AGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATCAGACGCTGCTGGTCCGGGGGA 3234027 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || | || | || | |||||| || |||||| Sbjct 3234028 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAGCTCTCGAC 3234086 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || | || |||||||| || || || ||||| || ||||| Sbjct 3234087 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 3234134 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| || || || || || ||||| || || || || || Sbjct 2682151 ATACCACCACGCAGACGCAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCA 2682210 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| |||| || || || ||| | || | || ||||||||||| Sbjct 2682211 GCGAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGT 2682270 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || ||||| || | | || | | | || | || | |||||| || ||||| Sbjct 2682271 GGGATGCCCTCCTTATCCTGGA-TCTTGGCCTTAACGTTGTCGATGGTGTCAGACGACTC 2682329 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || ||||| || | ||| || ||||| || |||||| Sbjct 2682330 AACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCATC 2682381 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || |||||| || || || || ||||| ||||| || || || Sbjct 3234589 ATACCACCACGCAGACGCAGCACTAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCA 3234648 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| || || || || | ||||| || ||||||||||| Sbjct 3234649 GCAAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCCGGG 3234708 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || |||| || | |||||| || ||||| Sbjct 3234709 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCTGACGACTCA 3234768 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || || || || || || || ||||| Sbjct 3234769 ACCTCAAGGGTGATGGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCAT 3234818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003041798880