Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 167 3e-36 >seq1 Length=75119905 Score = 167 bits (184), Expect = 3e-36 Identities = 315/454 (69%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 54132634 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 54132693 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG--GCACCCCA-ATCTGTTTGAGGAG 127347 | || || ||||| | ||| | || ||| |||||||| | | || ||| || Sbjct 54132694 CCAGTCGAACGGGTTGACGGCGTTGTACATC-TTGCTGCACCCCAGAGCCGT--GAGCAG 54132750 Query 127348 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT 127407 || || | |||| |||| ||||||| ||| | | |||||| |||| |||| Sbjct 54132751 GCGGTCGGCGACGAACTCGATGTACTGGCCCATGAGTCCGGCGTTCATGCCGACGAGGGC 54132810 Query 127408 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGC 127467 |||||| || ||||| |||||||| || |||| ||||| || || || ||||| | Sbjct 54132811 ACATGGCAGAGCGTCGCAGATGAACTCCCTCTCGATGTCAACGGCGTCGGCGACGATCTC 54132870 Query 127468 GTGAATAGTGTCCACCCC-AGGT--CTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAA 127524 | | | | | || | || | | ||| | | | || ||| || || || Sbjct 54132871 GCGGACGCGGGACTCCTCGAGCTTGCCGTTGAGGAGTTCGTAGAGGAGG--CAG-GCGAA 54132927 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| || |||||||| || |||||||| || || |||||| || || ||||| Sbjct 54132928 GTCGCAGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCAT 54132987 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 |||||| |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 54132988 GAGACCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 54133047 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || ||||| || | || |||||||| ||| Sbjct 54133048 GACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 54133081 Score = 154 bits (170), Expect = 2e-32 Identities = 312/453 (69%), Gaps = 10/453 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || |||||||||||||| || ||||| || | ||| ||| |||||| Sbjct 42406480 GTAGTCTCCAACACGCTTCTCGAAGAAATTGGTCTTTCCCTGCAGGGAGATCAGCTCCAT 42406421 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 127349 | || |||||||| | | ||| | || | | ||| |||| | |||| || | Sbjct 42406420 CCAGTCGAATGGGTTTGTGGCGTTGTACATCTTCTTGCAGCCCAG-CGCCATGAGCAGGC 42406362 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | |||| |||| |||| ||||||| ||| || |||||| || | ||| | Sbjct 42406361 GGTCCGCGACGAACTCGATGTACTGGCTCATAAGGTCGCCGTTCATGCCCACGAGAGCGC 42406302 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | ||||||||||| ||| ||| || |||| ||||| || || || | ||||| | Sbjct 42406301 AAGGGAGCGCGTCGCAGACAAACTCCCTCTCGATGTCAACGGCGTCGCCGACGATCTCAC 42406242 Query 127470 GAATA-GTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCAAAC 127525 | | ||| | |||| | | | || | | ||| | || ||| || ||||| Sbjct 42406241 GGACGCGTGACTCGTCCAGCT-TGCTCCGGAGGATGTCGTAGAGGAGG--CAG-GCAAAG 42406186 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||| || || ||||| |||||||| || || || ||||| || || |||||| Sbjct 42406185 TCGCAGTGCAGGCCTTCGTCGCGGGAGATAAGCTCGTTGGAGAAAGTTAGGCCCGGCATG 42406126 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 || || |||||||| | |||||| || || || || ||||| |||||||| |||||||| Sbjct 42406125 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAATATCCCCTCG 42406066 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || ||||| || | || |||||||||||| Sbjct 42406065 ACGCAGGCGAAGGCGACCAGGCGCTCGGCAAAG 42406033 Score = 113 bits (124), Expect = 6e-20 Identities = 388/597 (65%), Gaps = 15/597 (3%) Strand=Plus/Minus Query 12518 GCCGTCGCGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGA 12577 |||| |||| | || ||||||| ||| || | |||||| || | |||||| ||| Sbjct 43582663 GCCGCGGCGGCCGGCAAGGATGGCGGCCTCGTTCATGAGGTTAGCAAGGTCGGCGCCACT 43582604 Query 12578 GAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTC 12637 |||||||| ||| || | || | || | ||| | || ||| | |||||| Sbjct 43582603 GAAGCCCGGCGTGCGCATGGCCACCACGCCCAATGACACGCCCTCGTCCAGCCTCTTGTT 43582544 Query 12638 TCGGGCGTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGAT 12697 |||||| || | | |||| |||||| || |||||| || || ||||| | Sbjct 43582543 GGCGGCGTGCACCCTGAGGATCTCCTCGCGGCCACGCACATCAGGGAGCCCCACGGACAC 43582484 Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || | |||||||| || || ||||| || || |||||||||| || |||||||| Sbjct 43582483 CTGCCTGTCAAAGCGGCCGGGCCGGAGCAGCGCCGCGTCAAGGATCTCCGGCCGGTTCGT 43582424 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTATCG---AAGCCATCCATCTCAGTCAAGAG 12814 || || || || | || ||| || || || || || |||||||| || | || Sbjct 43582423 GGCGGCAATCACTATGACGCCTGTGCTGTCTCCGCTGAACCCGTCCATCTCGGTGAGCAG 43582364 Query 12815 TTGATTGATGGTTTGTTCACGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTG 12871 || || | ||| || || | || || || ||| | | || || || | ||| || Sbjct 43582363 CTGGTTCAGGGTCTGCTCCCTCTCGTCGTTGCCGCCGCCGATGCC---CGTGCCGCGCTG 43582307 Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAAC 12931 | || |||||||| || ||||| | ||| || | ||||| ||| | ||| | Sbjct 43582306 CCGCCCCACGGCGTCGATCTCGTCCACGAACACCAGGCACGGCGCGTTTGCCTTGGC--C 43582249 Query 12932 TT--CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTG 12989 || | || | || ||||| | || || || || ||||||||||| | || | Sbjct 43582248 TTGGCGAAAAGGTCGCGCACCCGAGACGCGCCCACGCCGACAAACATCTCGATGAACTCC 43582189 Query 12990 GCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 13048 | |||| || | || |||||| || || || ||||||||||| | ||| || || Sbjct 43582188 GACCCGGA-CAGCGAGAAGAAGGGCACCCCGGCCTCCCCCGCGATGGCCCTGGCCAGCAG 43582130 Query 13049 GGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 ||||||||||| || || ||| | || || | || | |||||||| || || Sbjct 43582129 CGTCTTCCCCGTGCCCGGCGGGCCCACCAGCAGCACCCCTCTCGGGATCCTCGCGCC 43582073 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || || ||||||||||||||||| || ||||||| ||||| || | |||||||||| | Sbjct 27734326 TCAAACCCATCCATCTCAGTCAATAGCTGATTGAGTGTTTGCTCCCTTTCATCATTCCCA 27734385 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | ||| | | | |||| | || || || |||||||| |||| || || || Sbjct 27734386 CCACCAATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAATACTATG 27734445 Query 12909 CACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 || || ||| | | || | ||| ||| | ||| || || | |||||| ||||| Sbjct 27734446 CAGGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACCCGGGAGGCACCAACACC 27734504 Query 12968 CACAAACATCTCCACAAA 12985 ||||||||||||||||| Sbjct 27734505 AACAAACATCTCCACAAA 27734522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506985272480