Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 170 3e-37 >seq1 Length=75119905 Score = 170 bits (188), Expect = 3e-37 Identities = 529/807 (66%), Gaps = 30/807 (4%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| || |||||||| |||| || ||| || ||||| | |||||||||| Sbjct 42406465 CTTCTCGAAGAAATTGGTCTTTCCCTGCAGGGAGATCAGCTCCATCCAGTCGAATGGGTT 42406406 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| || |||| | || || ||| |||| | ||| || || || || Sbjct 42406405 TGTGGCGTTGTACATCTTCTTGCAGCCCAGCGCCATGAGCAGGCGGTCCGCGACGAACTC 42406346 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAG--CCTAACGGGGAGCGCTTCC 159826 |||||| | ||| | || | ||| || |||| || | || |||||||| || Sbjct 42406345 GATGTACTGGCTCATAAGGTCGCCGTTCATGCCCACGAGAGCGCAA--GGGAGCGCGTCG 42406288 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCG 159883 | | ||||||| |||| || || || || ||| || |||| ||| ||| ||| Sbjct 42406287 CAGACAAACTCCCTCTCGATGTCAACGGCGTCGCCGACGATCTCACGGACGCGTGACTCG 42406228 Query 159884 TACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 | || |||||| | | | ||| | | |||||||| ||||||||||||||||| Sbjct 42406227 T---CCAGCTTGCTCCGGAGGATGTCGT---AGAGGAGGCAGGCAAAGTCGCAGTGCAGG 42406174 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 || ||||| || ||||| | ||||||||| | | ||||||||||||| || ||| Sbjct 42406173 CCTTCGTCGCGGGAGATAAGCTCGTTGGAGAAAGTTAGGCCCGGCATGAGGCCGCGCTTC 42406114 Query 160004 TTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAA 160062 |||||||| || |||| |||| ||| | | | | || || |||||||| ||| || || Sbjct 42406113 TTGAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAATATCCCCTCGACGCAGGCGAA 42406055 Query 160063 CGCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATT 160121 || || || | ||| |||| ||| | | | | | | |||| | ||||||||| Sbjct 42406054 GGCGACCAGGCGCTCGGCAAA----GCGCTCGCCGCCGTCGATCCAGCGCATGGCCCATT 42405999 Query 160122 CAGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGC 160177 | ||| ||||| ||||||| ||| ||||||||| || | | ||||| | Sbjct 42405998 CGGCC----TTGCGGCGCACGGCGGGGATGGTGTCGACGGCGCGGAAAAGACGGTCCTTC 42405943 Query 160178 TCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTT 160237 || | ||| ||| || | || ||| |||||||| || | ||| | || Sbjct 42405942 TCGACGTCCTCCCGGATGTAGGTCTCGATAAGCAGGGAGTACATCTCAGAGTGGATGTTC 42405883 Query 160238 TCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTG 160297 |||||||| ||||| ||| |||||| ||||| ||| || || || Sbjct 42405882 TCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACGTCGGACATG 42405823 Query 160298 AACCTTTGAC-CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 |||| ||| | || || | || | ||||||| ||| || ||||| || | ||| Sbjct 42405822 AACC-GGGACGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCAC 42405764 Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTG 160416 ||| |||| ||| || | |||||| ||| || | | |||||||| | |||| Sbjct 42405763 GTGGGAGACGAAGTGGCGCTCGTCGTTGGACAGCGTGGTGTCCCAGTGGCGCGCGTCGGA 42405704 Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCA 160443 || | || ||||| ||||| |||| Sbjct 42405703 GGAGAGGTCCACCTCCTCCGCCGTCCA 42405677 Score = 140 bits (154), Expect = 5e-28 Identities = 293/431 (68%), Gaps = 7/431 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || || || ||||| | |||| ||||| Sbjct 54132649 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTT 54132708 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| || ||| | || ||||||| |||| | ||| || || || || Sbjct 54132709 GACGGCGTTGTACATCTTGCTGCACCCCAGAGCCGTGAGCAGGCGGTCGGCGACGAACTC 54132768 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | | ||| || || | || | || || || || | Sbjct 54132769 GATGTACTGGCCCATGAGTCCGGCGTTCATGCCGACGAGGGCACATGGCAGAGCGTCGCA 54132828 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | |||||| |||| || || || || |||| || |||| ||| ||| || | | Sbjct 54132829 GATGAACTCCCTCTCGATGTCAACGGCGTCGGCGACGATCTCGCG-GACGCGGGACTCCT 54132887 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||||| | | | || | | |||||||| || |||||||||||||| |||| Sbjct 54132888 CGAGCTTGCCGTTGAGGAGTTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGCAGCCCCT 54132944 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | | |||| |||||||||| |||||| |||| Sbjct 54132945 CGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACCACGCTTCTTGA 54133004 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| ||| | | | | || ||||| ||||| ||| || || || Sbjct 54133005 GCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCG 54133063 Query 160067 ACGAGCCTCTC 160077 ||||| | ||| Sbjct 54133064 ACGAGGCGCTC 54133074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154921695680