Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3 116 1e-20 seq1 114 5e-20 seq2 100 1e-15 >seq3 Length=59935730 Score = 116 bits (128), Expect = 1e-20 Identities = 149/204 (73%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || ||||| || || ||||| ||||| || || |||||| Sbjct 13692584 ATGCAGATTTTTGTGAAGAC-CTCACTGGCAAGACAATTACCCTTGAGGTCGAGTCATCT 13692642 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | | || |||||||||||||||||| || |||||||| || || Sbjct 13692643 GACACGATCGATAATGTGAAGGCAAAAATTCAAGATAAGGAGGGCATTCCTCCGGACCAG 13692702 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | ||||| | ||||| ||||| | || |||||||| || ||| Sbjct 13692703 CAGCGTCTTATCTTCGCCGGGAAGTAGCTTGAGGATGGTCGCACCTTGGCGGACTACAAT 13692762 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | || || | || || ||| Sbjct 13692763 ATTCAGAAAGAGTCTACCCTGCAC 13692786 Score = 98.7 bits (108), Expect = 4e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || ||||| || || ||||| || |||||||||||||| ||||| || Sbjct 53307610 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACTATTACTCTTGAGGTTGAGAGCTCC 53307551 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || ||||| || || |||||||| |||||||| || || Sbjct 53307550 GATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCAGACCAG 53307491 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || || || || ||||| | || || || ||||| || Sbjct 53307490 CAAAGACTCATATTTGCCGGCAAGCAGCTAGAGGATGGCCGGACATTAGCTGATTACAAC 53307431 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || |||||| Sbjct 53307430 ATCCAGAAGGAGTCTACTCTTCAC 53307407 Score = 89.7 bits (98), Expect = 2e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| || || || || ||||| || || |||||| Sbjct 3235046 ATGCAAATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCATCT 3234987 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || || || || |||||||| || || || ||||| || Sbjct 3234986 GACACCATCGACAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 3234927 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || ||| |||| || || ||||||||||| || || | ||||| || || Sbjct 3234926 CAGCGCCTTATCTTCGCAGGCAAGCAGCTTGAAGATGGCAGGACCCTTGCGGACTACAAC 3234867 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 3234866 ATCCAGAAGGAGTCCACTCTGCAC 3234843 Score = 84.2 bits (92), Expect = 9e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || || ||||| ||||||||||||||||| || || || |||||||| ||||| Sbjct 57128818 GCTGTGATAACAGTTCCTGCTTATTTCAATGATGCTCAGCGTCAGGCAACTAAGGATGCT 57128877 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 || | |||||||| | |||| | | || || || ||||| || || |||||||| Sbjct 57128878 GGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACCGCTGCTGCTCT 57128936 >seq1 Length=75119905 Score = 114 bits (126), Expect = 5e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || || ||||| |||||||| ||| || |||| | |||| | || Sbjct 74171199 GTTCTGACCAAGATGAAGGAAACAGCTGAATCTTACCTTGGCAAGTCTATTACCAAGGCT 74171140 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||||||||| ||||||||||||||||| || ||||| || ||||| ||||| || Sbjct 74171139 GTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGGCAGGCCACTAAGGATGCTGGC 74171080 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 | ||||||||| | |||| | || ||||||||||| || || |||||||| Sbjct 74171079 CGTATTGCTGGACTTGATGTCGAAAGGATCATTAATGAACCAACTGCTGCTGCTCT 74171024 Score = 98.7 bits (108), Expect = 4e-15 Identities = 168/243 (69%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGT--- 451952 |||| |||| ||||| || |||||||| |||| |||| | |||| | || || Sbjct 2511236 ATGATGTTGTCCTTGTTGGTGGTTCTACTAGAATCCCTAGAGTTCAGCAGCTGCTGCAGG 2511177 Query 451953 -CTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCA 452011 |||||| | ||| | || || || |||||| | || |||||||| |||||||| Sbjct 2511176 ACTTCTTCAATGGGAAGGAA----CTCTGCAAGAGCATTAACCCTGATGAGGCTGTTGCC 2511121 Query 452012 TATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGAT 452071 ||||||||||| || || || ||||| || | ||| | |||| || | || Sbjct 2511120 TATGGTGCTGCTGTCCAGGCTGCTATCCTTAGTGGTGAGGGGAATGAGAAGGTGCAGGAC 2511061 Query 452072 ATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATG 452131 |||| | | ||||| || || || |||||||| |||| || ||||||||| | ||| Sbjct 2511060 CTTCTCCTCCTTGATGTGACTCCACTGTCTCTTGGTCTTGAGACTGCTGGTGGAGTTATG 2511001 Query 452132 ACT 452134 ||| Sbjct 2511000 ACT 2510998 Score = 98.7 bits (108), Expect = 4e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || || ||||||||||| ||||| |||||| Sbjct 55138557 ATGCAGATATTTGTGAAGACCCTCACAGGCAAGACAATTACTCTTGAGGTTGAGTCATCT 55138498 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | || ||||| ||||||||||| || |||||||| || || Sbjct 55138497 GACACTATCGATAACGTGAAGGCGAAAATCCAAGATAAGGAGGGCATTCCTCCAGACCAG 55138438 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | ||||| || || | ||||| | || ||||| || ||||| Sbjct 55138437 CAGCGTCTTATCTTCGCCGGGAAGCAGCTCGCCGATGGGCGCACCTTGGCAGACTATAAC 55138378 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | || || | || || ||| Sbjct 55138377 ATTCAGAAAGAGTCCACCCTGCAC 55138354 >seq2 Length=59384932 Score = 100 bits (110), Expect = 1e-15 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 |||||| | ||||| || ||||| || |||||||||||||| | ||| || ||||| Sbjct 30229614 AGTTACCAAGGCAGTGATCACTGTCCCTGCTTATTTCAATGACTCGCAAAGGACTGCAAC 30229555 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| |||| ||||| || ||| ||||||| || || || || || ||||| || Sbjct 30229554 AAAAGATGCTGGACGCATTGCAGGGTTAGATGTTCTCCGTATCATAAACGAGCCTACTGC 30229495 Query 451432 AGCTGCTCTAGCATATGG 451449 || | |||||||||| Sbjct 30229494 TGCATCGTTAGCATATGG 30229477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975717691211024