Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 212 5e-49 seq4 120 2e-21 >seq1 Length=75119905 Score = 212 bits (234), Expect = 5e-49 Identities = 689/1059 (65%), Gaps = 16/1059 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| || || ||||||||||||||||| | || || ||| || ||||| || Sbjct 2510762 GCAGAGACGTTCAGAATACCATTGGCATCAATGTCGAAGCAGACAGTGATCTGAGGAACA 2510821 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || || ||||||| ||||| || | | ||| | || || ||| || || || Sbjct 2510822 CCCCTGGGAGCAGGCGGGATTCCAGAAAGTTCAAACTTGCCAAGGAGATTGTTGTCCCTA 2510881 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | | | |||||||| || | ||||| || ||| || ||||| || || Sbjct 2510882 GTCCTTGTCCTCTCACCCTCAAACACCTGGATCAATACACCAGGCTGGTTATCAGAGTAG 2510941 Query 517439 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 || | || || ||| || || |||||| || ||||| || || | || Sbjct 2510942 GTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCTTGTGATGAGCACAGT 2511000 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||||| ||||| || || || | ||||||||| || ||||| ||||||| |||| || Sbjct 2511001 CATAACTCCACCAGCAGTCTCAAGACCAAGAGACAGTGGAGTCACATCAAGGAGGAGAAG 2511060 Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 517617 | || | || |||| | |||| ||| ||||| || || | |||||||||||| Sbjct 2511061 GTCCTGCACCTTCTCATTCCCCTCACCACTAAGGATAGCAGCCTGGACAGCAGCACCATA 2511120 Query 517618 TGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 |||||||| |||||||| |||| | || || |||| || |||||||| || | Sbjct 2511121 GGCAACAGCCTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTCCCATTGAAGAAGTCC 2511178 Query 517676 GAAAGAAGTTGTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 || || || || | || |||| || | || || || ||||| | |||| ||||| Sbjct 2511179 TGCAGCAGCTG-CTGAACTCTAGGGATTCTAGTAGAACCACCAACAAGGACAACATCATG 2511237 Query 517735 CACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCG 517793 | ||| | || |||| || | |||| | || || || || || | | | Sbjct 2511238 GATA-GTGCTCTTGTCCATCTTGGCATCCCTCAGGCACTTCTCCACAGGCTCCATGCACT 2511296 Query 517794 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 517853 || || | ||| ||| || || || | || || || | ||| || ||| Sbjct 2511297 TCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCCCTGGTGATCGTGGAATAGAAAT 2511356 Query 517854 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 517913 ||| ||||| | | ||||||| ||| || |||||||| | | ||||| || | | Sbjct 2511357 CAACACCTTCATAGAGGGAATCAATTTCGATGGTAGTTTGGGCTGTGGAAGAAAGCGTTC 2511416 Query 517914 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAAT 517973 || || | ||||||| ||||| || || | || | | | | | | | || Sbjct 2511417 TCTTCGCCCTCTCACATGAAGTCCTGAGCCTCCTCAAAGACCTGGGGTTTCCACTGATAT 2511476 Query 517974 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 518033 | | || | ||| ||||| || |||| ||| | | || || ||||| ||||| | Sbjct 2511477 CCTTCTTGTGTTTCCTCTTAAATTCTTGGACAAAGTGGTTAACCAGGCGATTGTCAAAGT 2511536 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 518093 | || || || | | ||| | || | || || | || | ||| | || || |||| Sbjct 2511537 CCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCCTTCACCTCGAAGATACCCTCCTCAA 2511596 Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 518153 || | |||| |||||| || |||||||| | ||||||||||| |||||| | | Sbjct 2511597 TAGTGAGGAGAGAGACATCAAAAGTGCCACCACCGAGGTCAAAAATAAGCACATTCTTCT 2511656 Query 518154 CTTTGTCT-TGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 518207 | | |||| | || ||||||||||| |||| ||||| |||||||| || | Sbjct 2511657 CACCAACACTGGTAGCCTTCTTGTCAAGACCATAGGCAATTGCAGCTGCAGTTGGCTCGT 2511716 Query 518208 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 518267 | || || | || ||||||||||||||||| || ||||| ||||| || || || | Sbjct 2511717 TGATGATACGCATGACATTAAGACCAGCAATAACACCAGCATCCTTAGTTGCCTGCCTCT 2511776 Query 518268 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | ||||| || || || ||||||||||| | ||| |||| Sbjct 2511777 GGGAATCATTGAAGTAAGCAGGAACAGTGACAACAGCAT 2511815 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || | || |||||||||||||||||||||||| || || |||| ||| |||||| Sbjct 74171015 CCGTAAGAAAGAGCAGCAGCAGTTGGTTCATTAATGATCCTTTCGACATCAAGTCCAGCA 74171074 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||| |||||||| || | || | ||| || ||||| || ||||||||| Sbjct 74171075 ATACGGCCAGCATCCTTAGTGGCCTGCCGCTGAGCATCATTGAAATAAGCTGGAACAGTA 74171134 Query 518297 ATAACGGC 518304 || || || Sbjct 74171135 ATCACAGC 74171142 >seq4 Length=48772488 Score = 120 bits (132), Expect = 2e-21 Identities = 535/829 (65%), Gaps = 30/829 (4%) Strand=Plus/Minus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||||| ||| || ||||| || | ||||||||||||||| |||||||| | || | Sbjct 3419636 GTCATAACACCTCCAGCTGTCTCCAGACCAAGAGAAAGAGGGGTGACATCCAACAGCAGC 3419577 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 517614 | | || | || |||| | || ||||| | || || || | |||||| || Sbjct 3419576 AGGTCCTGGACCTTCTCATTGCCCTCTCCGCTCAAGA-TGGCAGCCTGGACAGCAGCCCC 3419518 Query 517615 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 517672 || |||||||| |||||||| || | | || || || | || || ||||| || Sbjct 3419517 GTAGGCAACAGCCTCATCAGGGTTGATGCTCTTGCAC--AGCTCCTTGCCGTTGAAGAAG 3419460 Query 517673 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 | |||||| || || | ||||| | | || || ||||| | |||| ||| Sbjct 3419459 TCCTGAAGAAGCTGCTGCACTCTGGGAATCCTGGTGGAACCACCAACAAGGACAACATCA 3419400 Query 517733 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 517791 ||||| ||| | ||||||| || | |||| | || || || || || | | Sbjct 3419399 TGCACA-GTGCTCTTATCCATCTTGGCATCCCTGAGGCACTTCTCCACAGGCTCCATGCA 3419341 Query 517792 CGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 517849 | || |||| || || || || || || | || | || | ||| | || Sbjct 3419340 CTTCCTGAACAGATCCATGTTCATC--TCCTCAAACCTGGCACGGGTGATGGTGG-AGTA 3419284 Query 517850 TAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGA 517905 || ||||| || ||||||| || |||| ||||| || || || ||| || || || Sbjct 3419283 GAAGTCAATGCCCTCGAACAGCGAGTCAATCTCAATGGTGGTCTGGGCAGTGGAGGA-GA 3419225 Query 517906 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG 517965 ||| | | || || | ||||| | |||||| || || || | || ||| | ||| Sbjct 3419224 GAGTCCTCTTT--GCCCTCTCACAGGATGTCCTCAGCCTCCGGAGAGCCCTTG--GGTTG 3419169 Query 517966 --ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 518023 | | | || | || | |||||||| || || | || | | || | | Sbjct 3419168 CCACTGATGTCCTTCTTGTTCTTTCTCTTAAACTCCTGGACGAAGTGGTTGACCATCCTG 3419109 Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || |||||||| ||||| || | | ||| | || | || || | || | || | Sbjct 3419108 TTGTCAAAATCCTCACCACCAAGGTGAGTGTCACCAGCTGTGGCCTTGACCTCAAAGATA 3419049 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 || || |||| | | ||| | ||||| ||| || || || | |||||| || || Sbjct 3419048 CCCTCCTCAATGGTGAGAAGGGAGACATCGAAGGTACCGCCTCCAAGATCAAAGATGAGG 3418989 Query 518144 ACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 |||||| | || | ||| || || ||||||||||| |||| ||||||||| Sbjct 3418988 ACATTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCA 3418929 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 ||||| || || || || | || |||||| | |||||||| || ||||| || ||| Sbjct 3418928 GTTGGCTCGTTGATGATACGCAGAACATTGATGCCAGCAATGACACCAGCATCCTTGGTG 3418869 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || || || || || || |||||||||||||| | |||||||| Sbjct 3418868 GCCTGCCTCTGCGAGTCATTGAAGTATGCAGGAACAGTGACAACGGCAT 3418820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821010547768