Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 >seq1 Length=75119905 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 54133081 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 54133022 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| ||||||||||| || ||| |||||||||||| Sbjct 54133021 CTGCGCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAACGA 54132962 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 54132961 GCTCATCTCGCGCGACGAGGGGCTGCAC 54132934 Score = 134 bits (148), Expect = 2e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 |||||| ||||| || |||| || || || || ||||| || |||||||| || ||||| Sbjct 42406033 CTTTGCCGAGCGCCTGGTCGCCTTCGCCTGCGTCGAGGGGATATTCTTCTCGGGCTCCTT 42406092 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | |||||||||||||| || |||||||| || || ||||||||||| Sbjct 42406093 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTAACTTTCTCCAACGA 42406152 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||| || ||||| || || ||| || ||||| Sbjct 42406153 GCTTATCTCCCGCGACGAAGGCCTGCACTGCGACTTTGC 42406191 Score = 120 bits (132), Expect = 4e-22 Identities = 308/460 (67%), Gaps = 22/460 (5%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| | || || || || ||||| ||| || | |||| | || || ||| Sbjct 25424874 CGATCAAACCTCCCCGGCCGCAGAAGCGCCGAATCCAGCACATCAGGCCTGTTGGTCGCG 25424815 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 |||| || | | ||| |||||| | || ||||||||||| || | ||||||| Sbjct 25424814 GCGAGCACTATGACACCGCTGTTTCCGGAG--AAGCCATCCATCTCCGTGAGCAGCTGGT 25424757 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 16060 |||| || || |||| ||||||||| | | ||| || |||| || ||| | || Sbjct 25424756 TAATGGTCTGCTCCCTCTCATCATTCCC--CCCACCCATTCCGGCACCACGCTGCCTCCC 25424699 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 16116 ||||| || |||||||| |||||||||||||| || ||| || || | | Sbjct 25424698 GACGGCGTCGATCTCATCGATGAAGACGATGCACGGCGCCTTGGCCTTGGCCTTC----T 25424643 Query 16117 CAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 | || || |||| ||| || | |||||||| || || |||| ||| || || | | Sbjct 25424642 CGAACAGGTCCC--TCACCCTGGACGCGCCCACGCCCACGAACAGCTCGACGAACTCGGA 25424585 Query 16175 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 || | || || ||| || || | ||| || || | ||| |||||||| || || Sbjct 25424584 CGCCGCGCAGGAGAAGAACGGCACGCCGGCTTCCCCGGCGACGGCACGGGCGAGCAGCGT 25424525 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCCACTTC 16293 ||| |||||||| ||| || | || | |||| | | | || |||||||| ||| Sbjct 25424524 CTTCCCCGTACCCGGCGGGCCGACAAGCA-GGCAGCCCTTGGGGATCTTGGCCCCAAGCG 25424466 Query 16294 CAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 | |||| | ||||| | ||| || |||||||| | ||| Sbjct 25424465 CGGTGTATTTGTCAGGGTTCTTGAGGAAATCCACGACCTC 25424426 Score = 111 bits (122), Expect = 2e-19 Identities = 149/204 (73%), Gaps = 14/204 (7%) Strand=Plus/Plus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 ||||| ||||||||||| ||||| ||||| || | ||||| |||| |||||||||| | Sbjct 27734326 TCAAACCCATCCATCTCAGTCAATAGCTGATTGAGTGTTTGCTCCCTTTCATCATTCCC- 27734384 Query 16032 GGCATACCACCAGCA-CTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 16085 ||||||| | ||| | |||| |||| || |||||||| ||||||| || Sbjct 27734385 -----ACCACCAATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAT 27734439 Query 16086 ACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCC 16144 || ||||| || ||| | | | | ||| ||| ||||| || || || ||| || Sbjct 27734440 ACTATGCAGGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACCCGGGAGGCACC 27734498 Query 16145 CACACCAACAAACATCTCCACAAA 16168 ||||||||||||||||||||||| Sbjct 27734499 AACACCAACAAACATCTCCACAAA 27734522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742182740160