Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 129 7e-25 seq3 86.0 7e-12 >seq1 Length=75119905 Score = 129 bits (142), Expect = 7e-25 Identities = 272/405 (67%), Gaps = 12/405 (3%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||| || ||||| || ||||| |||||||| || ||||| || | |||||| || Sbjct 25424785 GAAGCCATCCATCTCCGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCATT------ 25424732 Query 11652 CATACCACC--TGCCGA----ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATAC 11705 | ||||| | ||| ||||| | | ||||| ||||| |||||||||||||| || Sbjct 25424731 CCCCCCACCCATTCCGGCACCACGCTGCCTCCCGACGGCGTCGATCTCATCGATGAAGAC 25424672 Query 11706 GATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAAC 11765 ||| ||||| ||||| |||| ||||| || || | || | ||| || || Sbjct 25424671 GATGCACGGCGCCTTGGCCTTGGCCTTCTCGAACAGGTCCCTCACCCTGGACGCGCCCAC 25424612 Query 11766 ACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTC 11825 || ||||||| ||| ||||| | | || | || | ||| || || | || Sbjct 25424611 GCCCACGAACAGCTCGACGAACTCGGACGCCGCGCAGGAGAAGAACGGCACGCCGGCTTC 25424552 Query 11826 ACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGC 11885 || |||| ||| || ||||| || ||||| |||||||| || | || | || ||| Sbjct 25424551 CCCGGCGACGGCACGGGCGAGCAGCGTCTTCCCCGTACCCGGCGGGCCGACAAGCAGGCA 25424492 Query 11886 GCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 ||| |||||||||||| ||| | ||| ||||| ||||||||||| ||||| Sbjct 25424491 GCCCTTGGGGATCTTGGCCCCAAGCGCGGTGTATTTGTCAGGGTTCTTGAGGAAATCCAC 25424432 Query 11946 AATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATC 11990 | ||||| || || |||||| |||| ||| |||| || Sbjct 25424431 GACCTCCTGTAGCTCAAGCTTGGCCTGGTCGGCACCGGCAACGTC 25424387 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || ||||| || || || ||||||||||| || |||| || || |||||||| || Sbjct 54132935 TGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACCA 54132994 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 54132995 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 54133054 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 54133055 GCGAAGGCGACGAGGCGCTCGGCGAA 54133080 >seq3 Length=59935730 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| ||||| | ||| || ||||| ||||||||||||||||| || ||||| ||| || Sbjct 55059285 GTATATGTTTGACGTATACGGTTCAAAACACTCATTGTTGCCAAGAATTTGACTAGTAGA 55059344 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||| || ||||| ||||| | ||||||| ||||| Sbjct 55059345 AGCAGTTGGCATTGGAGCAACGAGAAGAGAGTTTC 55059379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975793858400