Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 129 7e-25 >seq1 Length=75119905 Score = 129 bits (142), Expect = 7e-25 Identities = 305/454 (67%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| | || || || || ||||| ||| || | |||| | || |||||| Sbjct 25424874 CGATCAAACCTCCCCGGCCGCAGAAGCGCCGAATCCAGCACATCAGGCCTGTTGGTCGCG 25424815 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 |||| || | | ||| |||||| | || ||||||||||| || | || |||| Sbjct 25424814 GCGAGCACTATGACACCGCTGTTTCCGGAG--AAGCCATCCATCTCCGTGAGCAGCTGGT 25424757 Query 9310 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 9367 |||| || || |||| ||||||||| | | ||| || |||| || ||| | || Sbjct 25424756 TAATGGTCTGCTCCCTCTCATCATTCCC--CCCACCCATTCCGGCACCACGCTGCCTCCC 25424699 Query 9368 CACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 ||||| || |||||||| |||||||| || || || || | ||| | || || Sbjct 25424698 GACGGCGTCGATCTCATCGATGAAGACGATGCACGGCGCCTTGGCCTTGGCCTTCTCGAA 25424639 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 || || | ||||| |||||||| || || |||| ||| || || | | || | Sbjct 25424638 CAGGTCCCTCACCCTGGACGCGCCCACGCCCACGAACAGCTCGACGAACTCGGACGCCGC 25424579 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || || ||| || || | ||| || || | ||| |||||||| || ||||| || Sbjct 25424578 GCAGGAGAAGAACGGCACGCCGGCTTCCCCGGCGACGGCACGGGCGAGCAGCGTCTTCCC 25424519 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCCACTTCCAAAGT 9606 |||||| ||| || | || | |||| ||| | || |||||||| ||| | || Sbjct 25424518 CGTACCCGGCGGGCCGACAAGCA-GGCAGCCCTTGGGGATCTTGGCCCCAAGCGCGGTGT 25424460 Query 9607 ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 || | ||||| | |||||| |||||||| | ||| Sbjct 25424459 ATTTGTCAGGGTTCTTGAGGAAATCCACGACCTC 25424426 Score = 123 bits (136), Expect = 3e-23 Identities = 305/455 (67%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || |||||||| |||||||||||||| || | || ||| ||||| Sbjct 54132635 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 54132694 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGG-GTGGCACCCCA-ACTTGTTTGAGGAGAC 117103 |||| || || || ||||| | || | |||||||| | || ||| || | Sbjct 54132695 CAGTCGAACGGGTTGACGGCGTTGTACATCTTGCTGCACCCCAGAGCCGT--GAGCAGGC 54132752 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 | || | || |||| ||||||| | ||| | | |||||| |||| ||| || Sbjct 54132753 GGTCGGCGACGAACTCGATGTACTGGCCCATGAGTCCGGCGTTCATGCCGACGAGGGCAC 54132812 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 |||| || ||||| |||||||| | |||| || ||||| || || ||||| || Sbjct 54132813 ATGGCAGAGCGTCGCAGATGAACTCCCTCTCGATGTCAACGGCGTCGGCGACGATCTCGC 54132872 Query 117224 GGATAGTTTCGGTAGTGGGTCTA--TTAC----GCAAAGTCTTGAAGAGCTCCACGGCAA 117277 ||| ||| | | || | || | | ||| | | |||| ||| | Sbjct 54132873 GGACG----CGGGACTCC-TCGAGCTTGCCGTTGAGGAGT-TCGTAGAGGAGGCAGGCGA 54132926 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | || ||| || ||||| || || || || || || || |||||| || || |||| Sbjct 54132927 AGTCGCAGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCA 54132986 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 ||||||| |||||||| | ||| | || |||||||| || || ||||||||||| |||| Sbjct 54132987 TGAGACCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCT 54133046 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 | || || || || || | ||||||||||||||| Sbjct 54133047 CGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 54133081 Score = 122 bits (134), Expect = 1e-22 Identities = 304/452 (67%), Gaps = 10/452 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| ||||| |||||||| ||||| |||||||| || | ||| || ||||| Sbjct 42406479 TAGTCTCCAACACGCTTCTCGAAGAAATTGGTCTTTCCCTGCAGGGAGATCAGCTCCATC 42406420 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 117104 |||| ||||| || | ||||| | || | ||| |||| | | ||| || || Sbjct 42406419 CAGTCGAATGGGTTTGTGGCGTTGTACATCTTCTTGCAGCCCAGCGCCAT-GAGCAGGCG 42406361 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 |||| || |||| ||||||| | ||| || |||||| || | |||| || Sbjct 42406360 GTCCGCGACGAACTCGATGTACTGGCTCATAAGGTCGCCGTTCATGCCCACGAGAGCGCA 42406301 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| ||||| ||| ||| | |||| || ||||| || || ||||| | | Sbjct 42406300 AGGGAGCGCGTCGCAGACAAACTCCCTCTCGATGTCAACGGCGTCGCCGACGATCTCACG 42406241 Query 117225 GATAGTTTCGGTAGTGGGTCTAT-TACGCA--AAGTCTT-GAAGAGCTCCACGGCAAACT 117280 || | | | || || | || | | ||| | || ||| || |||||| | Sbjct 42406240 GAC-GCGTGACTCGTCCAGCTTGCTCCGGAGGATGTCGTAGAGGAGG--CA-GGCAAAGT 42406185 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | ||| || || || || ||||| ||||| || || ||||| |||||| ||||||| Sbjct 42406184 CGCAGTGCAGGCCTTCGTCGCGGGAGATAAGCTCGTTGGAGAAAGTTAGGCCCGGCATGA 42406125 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 | || |||||||| | ||| | || |||||||| || || |||||||| || ||||| | Sbjct 42406124 GGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAATATCCCCTCGA 42406065 Query 117401 CACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 | || || || || | ||||||||||| ||| Sbjct 42406064 CGCAGGCGAAGGCGACCAGGCGCTCGGCAAAG 42406033 Score = 111 bits (122), Expect = 2e-19 Identities = 147/203 (72%), Gaps = 12/203 (6%) Strand=Plus/Plus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338 ||||| ||||||||||| ||||| || || || | ||||| |||| |||||||||| | Sbjct 27734326 TCAAACCCATCCATCTCAGTCAATAGCTGATTGAGTGTTTGCTCCCTTTCATCATTCCC- 27734384 Query 9339 GGCATACCACCAGCAC-TG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 9392 ||||||| || || | |||| |||| || |||||||| ||||||| || Sbjct 27734385 -----ACCACCAATACCTGTTCCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAT 27734439 Query 9393 ACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCC 9452 || || || || ||| || ||| | | || ||||| ||||||| ||| || Sbjct 27734440 ACTATGCAGGGAGCATTCTCCTTGGCCTTCTTGAAAAGATCACGAACCCGGGAGGCACCA 27734499 Query 9453 ACACCAACAAACATCTCCACAAA 9475 ||||||||||||||||||||||| Sbjct 27734500 ACACCAACAAACATCTCCACAAA 27734522 Score = 105 bits (116), Expect = 8e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || ||||| || ||||||||||| |||||||| | || ||| ||||| || || Sbjct 47003991 CTGGGGCCTTGGGGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTGAACCAACGCTG 47003932 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 ||||||| | |||||| | | |||| |||||||| ||| ||| || || | | Sbjct 47003931 GGACATCAGATGGTATGTTCTGATGGCAGAGTCAATGTCATCCTTGTGTATCCCTACTGA 47003872 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 107344 || | ||| ||||||| || ||| |||| | || || ||| | ||| || |||| Sbjct 47003871 TACTCTCATTAACATGTGCTGTGGTCTTTCAACGACAATCCCACCAAGC--TTCAAGAGG 47003814 Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 || | |||| || || |||| ||| ||||| || ||||| |||||| Sbjct 47003813 TAAGACCTCTCCAGAGTCTTGAAACCGAAGTAGTCATAATCAAAGTCCC 47003765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980593506720