Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 100 3e-16 seq1 82.4 9e-11 >seq3 Length=59935730 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || |||| | || ||| || ||||| ||| Sbjct 55061458 CCACCTTGATCAACATAGCGTGCAGTATCATTGAAAACACGTAGCATGGGAACAATTCCA 55061517 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| || || ||||||||| ||| ||||||| || || |||||| Sbjct 55061518 TTAGAAGTTCCATTTGTGCCTCGAATATAACTCCCAGTAGCTCTAATGTTGTGAATTGAG 55061577 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| ||| || | || |||||||||||| Sbjct 55061578 ACACCAATTCCTCCAGCAGATTTGCTTATGGAAGCGCATTCTGAGAGAGTATCATAAATT 55061637 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||| ||| |||| Sbjct 55061638 CCCTCAATACTATCGTCTTTCAT 55061660 >seq1 Length=75119905 Score = 82.4 bits (90), Expect = 9e-11 Identities = 112/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 48105 TCGTATTTAGTATATAACTTCTCAAA---TTCATCCCCATACACATTATCTAACCCAGGA 48161 |||||||| | || || |||||||| |||| ||||| || || | | || || ||| Sbjct 47004844 TCGTATTTCTTGTACAAGTTCTCAAACTTTTCA-CCCCAG-CA-ATCAGCCAAGCCTGGA 47004788 Query 48162 CATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATA 48221 |||||||||||| | ||||||||| || |||| ||| | |||||| ||| |||| | Sbjct 47004787 GCTTCATTAGGACAAAACAATGACCATTCTTCATTATTCTGTACTCTTTGCATGAATAGA 47004728 Query 48222 TCTGGTATCCAAAGAGCTATAAATAAATCCCT 48253 || || | ||| ||||| | || | |||||| Sbjct 47004727 TCAGGAACCCAGAGAGCAAAGAAAAGATCCCT 47004696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108603261920