Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 132 4e-25 seq2 107 2e-17 seq4 105 5e-17 seq3 104 2e-16 >seq1 Length=75119905 Score = 132 bits (146), Expect = 4e-25 Identities = 522/810 (64%), Gaps = 16/810 (2%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTT 551846 ||| || |||| |||||||| || || ||||| ||| | ||||| | || | ||| Sbjct 2511562 TGGTGACACTCACCTTGGTGGGGAGGACTTTGACAATCGCCTGGTTAACCAC--TTTGTC 2511505 Query 551847 GAAGATTTTAAACGAAAAAACAA--AGTTGATCTATCTACATCTGCCAAAGCTCTTCGTC 551904 |||| ||||| | ||| |||| || ||| | | | | ||| || | | Sbjct 2511504 CAAGAATTTAAGAGGAAACACAAGAAGGATATCAGTGGAAACC--CCAGGTCTTTGAGGA 2511447 Query 551905 GTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTA 551964 | || || ||| | || || || || || || | ||||| || | ||||| || | Sbjct 2511446 GGCTCAGGACTTCATGTGAGAGGGCGAAGAGAACGCTTTCTTCCACAGCCCAAACTACCA 2511387 Query 551965 TTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAAT 552024 | ||| | ||||| | | ||| || |||||| || | | || | ||||||| | Sbjct 2511386 TCGAAATTGATTCCCTCTATGAAGGTGTTGATTTCTATTCCACGATCACCAGGGCCAGGT 2511327 Query 552025 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT-TA 552083 |||| || || || ||||| || || || || || || || |||| | Sbjct 2511326 TTGAGGAGCTTAACATGGACCTCTTCAGGAAGTGCATGGAGCCTGTGGAG-AAGTGCCTG 2511268 Query 552084 AGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACA 552143 || ||| | ||||| || || || | ||||| |||| ||||||||||| ||||| Sbjct 2511267 AGGGATGCCAAGATGGACAAGAGCACTATCCATGATGTTGTCCTTGTTGGTGGTTCTACT 2511208 Query 552144 AGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 ||||| |||| | ||| | || | || ||| || |||||| || || | || Sbjct 2511207 AGAATCCCTAGAGTTCAGCAGCTGCTGCAGGACTTCTT-CAATGGGAAGGAACTC--TGC 2511151 Query 552203 AAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTT 552260 ||| | |||| || ||||||||||||||||||||||| || | || || ||||| ||| Sbjct 2511150 AAGAGCATTAACCCTGATGAGGCTGTTGCCTATGGTGCTGCTGTCCAGGCTGCTATCCTT 2511091 Query 552261 TCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCT 552320 ||| | |||| || | || | || | || | ||||| ||||| || ||| Sbjct 2511090 AGTGGTGAGGGGAATGAGAAGGTGCAGGACCTTCTCCTCCTTGATGTGACTCCACTGTCT 2511031 Query 552321 CTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATT 552380 |||||| | || || | ||| || |||||||| || ||| || || || || ||| Sbjct 2511030 CTTGGTCTTGAGACTGCTGGTGGAGTTATGACTGTGCTCATCACAAGGAACACCACCATT 2510971 Query 552381 CCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATT 552440 ||| || || | || || || || || || ||||| || ||| ||| || Sbjct 2510970 CCTACCAAGAAGGAGCAGGTCTTCTCCACCTACTCTGATAACCAGCCTGGTGTATTGATC 2510911 Query 552441 CAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAAT 552500 || | ||||| || || || | | |||| || || |||| ||||| | ||| | Sbjct 2510910 CAGGTGTTTGAGGGTGAGAGGACAAGGACTAGGGACAACAATCTCCTTGGCAAGTTTGAA 2510851 Query 552501 TTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATC 552560 | || || || |||||||| | || || || || || || ||||| || Sbjct 2510850 CTTTCTGGAATCCCGCCTGCTCCCAGGGGTGTTCCTCAGATCACTGTCTGCTTCGACATT 2510791 Query 552561 GATGCCAATGGAATTTTGAATGTGACTGCT 552590 ||||||||||| ||| |||| || ||||| Sbjct 2510790 GATGCCAATGGTATTCTGAACGTCTCTGCT 2510761 Score = 102 bits (112), Expect = 7e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 |||| | || || || ||||| ||||| ||||| ||||| | || || || || |||| Sbjct 74171150 TTACCAAGGCTGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGGCAGGCCACTA 74171091 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | |||||||| ||||||||||||||| |||| | || || |||||||| ||||||| Sbjct 74171090 AGGATGCTGGCCGTATTGCTGGACTTGATGTCGAAAGGATCATTAATGAACCAACTGCTG 74171031 Query 550512 CTGCACTTGCATATGG 550527 |||| ||| | || || Sbjct 74171030 CTGCTCTTTCTTACGG 74171015 Score = 87.8 bits (96), Expect = 1e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 563284 TCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAA 563343 ||||| ||| ||||||||||||| |||| |||||| | ||| ||||| |||||| Sbjct 26504385 TCTTTCTGAATGTTGTAATCAGCTAACGTTCGCCCATCTTCCAATTGCTTTCCAGCAAAA 26504326 Query 563344 ATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 || || ||||||||||| || ||||| || ||||| || |||| Sbjct 26504325 ATTAGCCTTTGCTGATCCGGGGGAATGCCCTCTTTGTCCTGAA 26504283 >seq2 Length=59384932 Score = 107 bits (118), Expect = 2e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 ||||||| | ||||| || ||||| || || ||||| |||||||| ||| | || | Sbjct 30229615 AAGTTACCAAGGCAGTGATCACTGTCCCTGCTTATTTCAATGACTCGCAAAGGACTGCAA 30229556 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | |||||||||||||| ||||| || | ||||||| ||||| || || || ||||||| Sbjct 30229555 CAAAAGATGCTGGACGCATTGCAGGGTTAGATGTTCTCCGTATCATAAACGAGCCTACTG 30229496 Query 550509 CTGCTGCACTTGCATATGGACTTGATAAA 550537 |||| | | |||||||| |||| ||| Sbjct 30229495 CTGCATCGTTAGCATATGGTTTTGAAAAA 30229467 Score = 87.8 bits (96), Expect = 1e-11 Identities = 204/308 (66%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 552291 ATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATG 552350 ||||| ||| | ||||| || || || ||||| ||||| || ||| | || || | ||| Sbjct 30227161 ATTGTTCTTCTTGATGTCACACCACTGTCTCTGGGTTTGGAGACACTGGGTGGAGTGATG 30227102 Query 552351 ACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACG 552410 || || ||||| ||||| || || | ||| || || || || || || Sbjct 30227101 ACCAAGATTATCCCAAGAAACACAACCCTGCCTACCTCCAAGTCAGAGGTTTTCTCAACT 30227042 Query 552411 TATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACT 552470 | | ||| || ||| ||| ||| | | | ||||||||||| | || Sbjct 30227041 GCTGCTGATGGACAGACTAGTGTGGAGATTAATGTCCTCCAAGGAGAAAGAGAGTTTGTC 30226982 Query 552471 AAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGA 552530 | || || || ||||||| || | || || |||||||||||||| ||||| Sbjct 30226981 AGGGACAACAAATCCCTTGGTAGCTTCCGGCTGGATGGAATTCCTCCTGCTCCGCGTGGT 30226922 Query 552531 GTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 || |||||||||||||| | |||||||| ||||||||||| || | ||| ||||| Sbjct 30226921 GTTCCGCAAATTGAAGTGAAGTTCGATATTGATGCCAATGGTATCCTTTCTGTTGCTGCT 30226862 Query 552591 TGTGATAA 552598 |||||| Sbjct 30226861 GTTGATAA 30226854 >seq4 Length=48772488 Score = 105 bits (116), Expect = 5e-17 Identities = 116/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 550386 AAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAG 550445 || || |||| | ||||| | ||||| ||||| || || ||||||||||| | || Sbjct 44200245 AAAAAATTACAAAAGCAGTGGTCACTGTTCCAGCCTACTTCAATGACTCACAGAGAACAG 44200186 Query 550446 CTACTAAAGATGCTGGACGTATTGCTGGACTTA-ATGTTCTTCGTATTATCAATGAACCT 550504 | || ||||||||||| |||||||| || |||| | |||||||| ||||| ||||| || Sbjct 44200185 CAACAAAAGATGCTGGTCGTATTGCAGG-CTTAGAAGTTCTTCGCATTATAAATGAGCCG 44200127 Query 550505 ACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||||||| | || || ||||| |||| || Sbjct 44200126 ACTGCTGCATCCCTGGCTTATGGTTTTGAGAA 44200095 Score = 102 bits (112), Expect = 7e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || ||||| || |||||||| || | || || || || |||| Sbjct 3418820 ATGCCGTTGTCACTGTTCCTGCATACTTCAATGACTCGCAGAGGCAGGCCACCAAGGATG 3418879 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| |||||||| | |||||||| ||||| ||||| || || ||||||||||| Sbjct 3418880 CTGGTGTCATTGCTGGCATCAATGTTCTGCGTATCATCAACGAGCCAACTGCTGCTGCCA 3418939 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| ||||| || Sbjct 3418940 TTGCTTATGGTCTTGACAA 3418958 Score = 86.0 bits (94), Expect = 5e-11 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 550343 GTTTTAATGAAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAG-TTACGGATG 550400 ||| | | ||| ||||| |||| || ||| |||| |||| ||||| | || | | | Sbjct 39639483 GTTCTCACGAAGATGAAGGAAACTGCAGAGT-CTTTCCTTGG-CAAGACGGTTTCTAAGG 39639426 Query 550401 CAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTG 550460 | || || || || ||||| ||||| ||||| | || || || ||||| || ||||||| Sbjct 39639425 CTGTTATCACAGTCCCAGCTTATTTCAATGATGCCCAGCGCCAGGCTACCAAGGATGCTG 39639366 Query 550461 GACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTG 550520 | | ||||||||| | | || | | ||||||||||| || |||||||| || || Sbjct 39639365 GTAGGATTGCTGGATTGGAGGTGATGAGGATTATCAATGAGCCCACTGCTGCAGCTCTGT 39639306 Query 550521 CATATGGA 550528 | |||||| Sbjct 39639305 CGTATGGA 39639298 >seq3 Length=59935730 Score = 104 bits (114), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| | ||| || ||||| ||||| ||| || || || ||||||||||||| || Sbjct 53307389 CCTCAAACGAAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCTAATGT 53307448 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | ||| || || || || |||||||| || ||||||||||| || |||||||| || Sbjct 53307449 CCGGCCATCCTCTAGCTGCTTGCCGGCAAATATGAGTCTTTGCTGGTCTGGAGGAATGCC 53307508 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 ||| || || || ||||| || || ||||| ||||| | | | || || Sbjct 53307509 TTCCTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCGGAGCTCTCAACCTCAAG 53307568 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| ||| || ||||| || || ||||| || || ||||| Sbjct 53307569 AGTAATAGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 53307610 Score = 102 bits (112), Expect = 7e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||| || || ||||| ||| || || |||||||||||||| | || | Sbjct 53307164 GAGGCGGAGGACGAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGCCAATGTACG 53307223 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| ||||| || ||||||||||| ||||| || ||||| ||||| || || || || Sbjct 53307224 GCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCAGGTGGGATGCCCTC 53307283 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAG 563434 ||||| ||||| ||| || || ||||| || |||| | | || || |||| Sbjct 53307284 CTTATCCTGAATCTTTGCCTTCACATTGTCAATGGTGTCAGAGCTCTCGAC-CTCCAGAG 53307342 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || || || ||||| || ||||| || |||||||| Sbjct 53307343 TTATGGTCTTCCCTGTAAGTGTCTTAACAAAGATTTGCAT 53307382 Score = 96.9 bits (106), Expect = 3e-14 Identities = 155/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| ||||| || |||||| ||||| ||||||||| || || | || | Sbjct 13692800 AGACGGAGGACAAGGTGCAGGGTAGACTCTTTCTGAATATTGTAGTCCGCCAAGGTGCGA 13692741 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| ||||| | || ||||| || ||||| | ||||| || |||||||| || || Sbjct 13692740 CCATCCTCAAGCTACTTCCCGGCGAAGATAAGACGCTGCTGGTCCGGAGGAATGCCCTCC 13692681 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 ||||||||||||||| || || || || || |||| ||| | | || || || Sbjct 13692680 TTATCTTGAATTTTTGCCTTCACATTATCGATCGTGTCAG-ATGACTCGACCTCAAGGGT 13692622 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || ||||| || || || || ||||| ||||| Sbjct 13692621 AATTGTCTTGCCAGTGAG-GTCTTCACAAAAATCTGCAT 13692584 Score = 93.3 bits (102), Expect = 3e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || ||||| || || || ||||| ||||| | || ||||| || ||||| |||||| Sbjct 57128818 GCTGTGATAACAGTTCCTGCTTATTTCAATGATGCTCAGCGTCAGGCAACTAAGGATGCT 57128877 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 || || |||||||||||| |||| | | || ||||| ||||| || |||||||| || Sbjct 57128878 GGTCGAATTGCTGGACTTGATGTCCAAAGGATCATCAACGAACCAACCGCTGCTGCTCT 57128936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294519233720