Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq28 542 9e-150 seq4 538 1e-148 seq5 515 1e-141 seq1 412 1e-110 seq3 246 9e-61 >seq28 Length=135199 Score = 542 bits (600), Expect = 9e-150 Identities = 717/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 122 AGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 181 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 || |||||||| | || ||| |||||||| || | | ||| | ||||| || Sbjct 182 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTAC 241 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || || || || |||||||| || || | || || Sbjct 242 AGATTGGTTGAAATTGAATCCATTTAGGTTGAACGCCATAGTACTAATACCTAAAGCAGT 301 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || || ||||||| ||||| |||||| |||||| ||| ||||| Sbjct 302 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 361 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 362 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATA 421 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 || ||||||||||| || ||||| || || | || ||| | |||| ||||| Sbjct 422 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTC 481 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | ||| || || | |||||||||||| ||| | | || ||||| Sbjct 482 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 541 Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 || ||||| ||||| | |||||| || |||||||||||||| ||||| || |||||||| Sbjct 542 AACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCGGCCTGGAA 601 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||| | ||||||||| ||||||||||| || || | ||||||||||||| ||| ||||| Sbjct 602 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAGCTTCC 661 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 || || | |||||| | || || || | ||| || || ||||| || |||||||||| Sbjct 662 TTGACCAATAGGGTAAATCAAGAAAACAGCAGT-CGCAGCTGCAACAGGAGCTGAATATG 720 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 | || |||||| || ||||| || || | | ||||||||||||| | || |||| | Sbjct 721 CAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCCATAT 780 Query 5850 AAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAA 5909 || || | ||||| | |||||| | || | || | || || || |||||||| | Sbjct 781 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATA 840 Query 5910 GCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTT 5967 ||||||||| | ||| || |||||||| || || || ||||| || || ||||| Sbjct 841 ACCATTCATCAACGGAT--GCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATTGCCGC 898 Query 5968 GGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGAC 6027 || | || | || || || || || || ||||||||||| |||| ||| || | || Sbjct 899 AGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAAC 958 Query 6028 GGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGC 6087 || || || || || || || || ||||| || || || | ||| || | |||||| | Sbjct 959 AGGCTCGCGAATACCATCAATATCTACTGGAGGGGCTGCGATGAAGGCGATAATAAATAC 1018 Query 6088 AGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCG 6147 || ||||||||| || | | || ||||| || ||||| ||||| || | || || || Sbjct 1019 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACG 1078 Query 6148 GTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || | |||||||| | ||||| ||||| Sbjct 1079 ATTTTCAGTGCTAGTTATCCAGTTGCAGAA 1108 >seq4 Length=48772488 Score = 538 bits (596), Expect = 1e-148 Identities = 716/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 22676636 AGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 22676577 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 || |||||||| | || ||| |||||||| || | | ||| | ||||| || Sbjct 22676576 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTAC 22676517 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || || || || |||||||| || || | || || Sbjct 22676516 AGATTGGTTGAAATTGAATCCATTTAGGTTGAACGCCATAGTACTAATACCTAAAGCAGT 22676457 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || || ||||||| ||||| |||||| |||||| ||| ||||| Sbjct 22676456 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 22676397 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 22676396 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATA 22676337 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 || ||||||||||| || ||||| || || | || ||| | |||| ||||| Sbjct 22676336 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTC 22676277 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | ||| || || | |||||||||||| ||| | | || || || Sbjct 22676276 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCAAA 22676217 Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 || ||||| ||||| | |||||| || |||||||||||||| ||||| ||||||||||| Sbjct 22676216 AACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAA 22676157 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||| | ||||||||| ||||||||||| || || | ||||||||||||| ||| ||||| Sbjct 22676156 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAGCTTCC 22676097 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 || || | |||||| | || || || | ||| | | || ||||| || |||||||||| Sbjct 22676096 TTGACCAATAGGGTAAATCAAGAAAACAGCAGTCG-CAGCTGCAACAGGAGCTGAATATG 22676038 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 | || |||||| || ||||| || || | | ||||||||||||| | || |||| | Sbjct 22676037 CAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCCATAT 22675978 Query 5850 AAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAA 5909 || || | ||||| | |||||| | || | || | || || || |||||||| | Sbjct 22675977 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATA 22675918 Query 5910 GCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTT 5967 ||||||||| | ||| || |||||||| || || || ||||| || || ||||| Sbjct 22675917 ACCATTCATCAACGGAT--GCAGCTTCCCAAATTGGGTACAAGTGCAATCCGATTGCCGC 22675860 Query 5968 GGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGAC 6027 || | || | || || || || || || ||||||||||| |||| ||| || | | Sbjct 22675859 AGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAAT 22675800 Query 6028 GGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGC 6087 || || || || || || || || ||||| || || || | ||| || | |||||| | Sbjct 22675799 AGGCTCGCGAATACCATCAATATCTACTGGAGGGGCTGCGATGAAGGCGATAATAAATAC 22675740 Query 6088 AGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCG 6147 || ||||||||| || | | || ||||| || ||||| ||||| || | || || || Sbjct 22675739 AGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACG 22675680 Query 6148 GTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || | |||||||| | ||||| ||||| Sbjct 22675679 ATTTTCAGTGCTAGTTATCCAGTTGCAGAA 22675650 Score = 95.1 bits (104), Expect = 4e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 5390 GGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAG 5449 ||||||| ||||| ||| || |||||| | | | ||| || |||||||| |||||| Sbjct 45407042 GGCCAAGCAGCCAAGAAAAAGTGTAAAGAAGGAGAGTCGTTGAAACTAGCATATTGGAAG 45407101 Query 5450 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCG 5509 || | || ||||| || |||||| || ||||| ||||| || ||||||||||| || Sbjct 45407102 ATTAATCGGCCAAAATAAATATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCA 45407161 Query 5510 AATTTATATCCATAGTT 5526 ||||| || || | ||| Sbjct 45407162 AATTTGTAACCCTCGTT 45407178 >seq5 Length=28563423 Score = 515 bits (570), Expect = 1e-141 Identities = 714/991 (72%), Gaps = 9/991 (1%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 14558563 AGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 14558622 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 || |||||||| | || ||| |||||||| || | | ||| | ||||| || Sbjct 14558623 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACACGACCTTGACTATCAACTAC 14558682 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || || || || ||||||| || || | || || Sbjct 14558683 AGATTGGTTGAAATTGAATCCATTTAGGTTGAACCCCATAGTACTAATACCTAAAGCAGT 14558742 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA-TTGT 5429 | ||| || | || || ||||||| ||||| |||||| |||||| || | | |||| Sbjct 14558743 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACAGAGAGTTGT 14558802 Query 5430 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 5489 | || |||||||| |||||||| | || ||||| || ||||||||||| ||||| |||| Sbjct 14558803 TGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCCGCCACAATATTAT 14558862 Query 5490 ACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTT 5549 | || ||||||||||| || ||||| || || | || ||| | |||| |||| Sbjct 14558863 AAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTT 14558922 Query 5550 CACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGA 5609 | | || | ||| || || | |||||||||||| ||| | | || |||| Sbjct 14558923 CCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGA 14558982 Query 5610 ATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGA 5669 | || ||||| ||||| | |||||| || | |||||||||||| ||||| |||||||||| Sbjct 14558983 AAACACCAGCTACACCTAACATGTGAAATG-ATGCATAAGGATGTTGTGCTCTGCCTGGA 14559041 Query 5670 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTC 5729 |||| | ||||||||| ||||||||||| || || | ||||||||||||| ||| |||| Sbjct 14559042 ATACAATCATAAAGTTTAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAGCTTC 14559101 Query 5730 CCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATAT 5788 | || || | |||||| | || || || | ||| || || ||||| || ||||||||| Sbjct 14559102 CTTGACCAATAGGGTAAATCAAGAAAACAGCAGT-CGCAGCTGCAACAGGAGCTGAATAT 14559160 Query 5789 GCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAG 5848 || || |||||| || |||| || || | | ||||||||||||| | || |||| Sbjct 14559161 GCAACAACAATCCAAGGGTGCATACC-AAACGGAAACTAAGTTCCCACTCACGACCCATA 14559219 Query 5849 TAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAA 5908 ||| || | ||||| | |||||| | || | || | || || || |||||||| Sbjct 14559220 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTAT 14559279 Query 5909 AGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGT 5966 | |||||||| | ||| || ||||| || || || || ||||| || || ||||| Sbjct 14559280 AATCATTCATCAACGGAT--GCAGCTTCTCAAATTGGGTAAAAGTGCAATCCGATTGCCG 14559337 Query 5967 TGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGA 6026 || | || | || || || || || || ||||||||||| |||| ||| || | | Sbjct 14559338 CAGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAA 14559397 Query 6027 CGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATG 6086 | || || || || || || || || ||||| || || || | ||| || | |||||| Sbjct 14559398 CAGGCTCGCGAATACCATCAATATCTACTGGAGGGGCTGCGATGAAGGCGATAATAAATA 14559457 Query 6087 CAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGC 6146 ||| ||||||||| || | | || ||||| || ||||| ||||| | | || || | Sbjct 14559458 CAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCTGATGTAAAGAC 14559517 Query 6147 GGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 | || | |||||||| | ||||| ||||| Sbjct 14559518 GATTTTCAGTGCTAGTTATCCAGTTGCAGAA 14559548 >seq1 Length=75119905 Score = 412 bits (456), Expect = 1e-110 Identities = 564/783 (72%), Gaps = 6/783 (1%) Strand=Plus/Plus Query 5398 AGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCT 5457 ||||| |||||| |||||| ||| ||||| || |||||||| |||||||| | || Sbjct 3928919 AGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCG 3928978 Query 5458 CCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATA 5517 ||||| || |||||||| || ||||| ||||| || ||||||||||| || ||||| || Sbjct 3928979 GCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTGTA 3929038 Query 5518 TCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACT 5577 || | || ||| | |||| ||||| | || | ||| || || | Sbjct 3929039 ACCCTCATTAGCAGATTCATTTTCAGTAGTTTCCCTGATCAAACTAGAGGTTACCAAGGA 3929098 Query 5578 TCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAA 5637 |||||||||||| ||| | | || ||||| || ||||| ||||| | |||||| || Sbjct 3929099 ACCATGCATAGCACTGAATAGGGAACCGCCGAAAACACCAGCTACACCTAACATGTGAAA 3929158 Query 5638 CGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGA 5697 |||||||||||||| ||||| |||||||||||||| | ||||||||| ||||||||||| Sbjct 3929159 TGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTACCAGA 3929218 Query 5698 GATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATAC 5757 || || | ||||||||||||| ||| ||||| || || | |||||| | || || || Sbjct 3929219 TATTCCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCAATAGGGTAAATCAAGAAAAC 3929278 Query 5758 TG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTA 5816 | ||| || || ||||| || ||||||||||| || |||||| || ||||| || | Sbjct 3929279 AGCAGT-CGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCA 3929337 Query 5817 ATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGA 5876 | | | ||||||||||||| | || |||| ||| || | ||||| | |||||| | Sbjct 3929338 AACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTA 3929397 Query 5877 AGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTC 5934 || | || | || || || |||||||| | ||||||||| | ||| || ||||| Sbjct 3929398 GAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACGGAT--GCAGCTTC 3929455 Query 5935 CCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATAT 5994 ||| || || || ||||| || || ||||| || | || | || || || || || Sbjct 3929456 CCAAATTGGGTAAAAGTGCAATCCGATTGCCGCAGAAGTAGGAATAATAGCACCAGAGAT 3929515 Query 5995 GATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGAC 6054 || ||||||||||| |||| ||| || | || || || || || || || || || || Sbjct 3929516 AATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCGCGAATACCATCAATATCTAC 3929575 Query 6055 TGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTAT 6114 ||| || || || | ||| || | |||||| || ||||||||| || | | || || Sbjct 3929576 TGGAGGGGCTGCGATGAAGGCGATAATAAATACAAAAGTTGCGGTCAATAAGGTAGGGAT 3929635 Query 6115 CATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACA 6174 ||| || ||||| ||||| || | || || || || | |||||||| | ||||| || Sbjct 3929636 CATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGTGCTAGTTATCCAGTTGCA 3929695 Query 6175 GAA 6177 ||| Sbjct 3929696 GAA 3929698 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| | |||| | || ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 40901446 AGCAGGTAGACCTAGAGGGAAGTTGTGAGCATTGTGTTCGTGCATTACTTCCGTACCAAG 40901505 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGT 5280 || |||||||| | || | | | ||| || Sbjct 40901506 ATTAGCACGGTTGATGATACCAGACCATGT 40901535 Score = 84.2 bits (92), Expect = 7e-12 Identities = 79/104 (76%), Gaps = 14/104 (13%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTAC------------ 5238 ||| ||||| || || | ||||||||||||||| |||||||||||||| Sbjct 4286423 AGCAGCTAGGTCTAGAGAGAAGTTGTGAGCATTACGTTCGTGCATTACTGCCATACCAAG 4286482 Query 5239 --TTCCATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGT 5280 | ||||||||||||| |||||||||| || ||| |||||||| Sbjct 4286483 ATTGCCATACCAAGGTTAGCACGGTTCATGATATCAGCCCAAGT 4286526 >seq3 Length=59935730 Score = 246 bits (272), Expect = 9e-61 Identities = 321/444 (72%), Gaps = 0/444 (0%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 16822140 AGCAGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 16822081 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 || |||||||| | || ||| |||||||| || | | ||| | ||||| || Sbjct 16822080 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTAC 16822021 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || || || || |||||||| || || | || || Sbjct 16822020 AGATTGGTTGAAATTGAATCCATTTAGGTTGAACGCCATAGTACTAATACCTAAAGCAGT 16821961 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || || ||||||| ||||| |||||| |||||| ||| ||||| Sbjct 16821960 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 16821901 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 16821900 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATA 16821841 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 || ||||||||||| || ||||| || || | || ||| | |||| ||||| Sbjct 16821840 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTC 16821781 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | ||| || || | |||||||||||| ||| | | || ||||| Sbjct 16821780 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 16821721 Query 5611 TACCCCAGCAACACCGAGCATGTG 5634 || ||||| ||||| | |||||| Sbjct 16821720 AACACCAGCTACACCTAACATGTG 16821697 Score = 95.1 bits (104), Expect = 4e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 5996 ATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACT 6055 || ||||||||||| |||| ||| || | || || || || || || || || || ||| Sbjct 15391200 ATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCGCGAATACCATCAATATCTACT 15391259 Query 6056 GGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATC 6115 || || || || | || || | |||||| ||| ||||||||| || | | || ||| Sbjct 15391260 GGAGGGGCTGCGATTAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATC 15391319 Query 6116 ATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAG 6175 || || ||||||||||| || | || || | || | |||||||| | ||||| ||| Sbjct 15391320 ATCAAAACACCAAACCATCCGATGTAAAGATGATTTTCAGTGCTAGTTATCCAGTTGCAG 15391379 Query 6176 AA 6177 || Sbjct 15391380 AA 15391381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152649549244008