Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 seq1 111 1e-19 seq4 93.3 3e-14 >seq3 Length=59935730 Score = 111 bits (122), Expect = 1e-19 Identities = 147/203 (72%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| ||||| || |||||||| || || | || | |||| || | | | Sbjct 13692785 TGCAGGGTAGACTCTTTCTGAATATTGTAGTCCGCCAAGGTGCGACCATCCTCAAGCTAC 13692726 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||| || || || |||||||| || ||||||||||||||| Sbjct 13692725 TTCCCGGCGAAGATAAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGAATTTTT 13692666 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||||| | || || ||||| || | || ||||| | | Sbjct 13692665 GCCTTCACATTATCGATCGTGTCAGATGACTCGACCTCAAGGGTAATTGTCTTGCCAG-T 13692607 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 13692606 GAGGTCTTCACAAAAATCTGCAT 13692584 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| |||||||| || || || || || ||||| || || | || | |||| ||| Sbjct 3234610 ACTAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGACCATCCTCC 3234669 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| ||||||||||| || || || || ||||| || || || || Sbjct 3234670 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 3234729 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| |||| || || ||||| |||| || ||| Sbjct 3234730 ATCTTGGCCTTGACATTGTCAATGGTGTCTGACGACTCAACCTCAAGGGTGATGGTCTTG 3234789 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || || | || || || || ||||||||| | | |||||| Sbjct 3234790 CCTGTCAGTGTCTTCACGAAGATCTGCATGCCTCCCCGAAGA 3234831 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || ||||| | ||| | ||||| ||||| || || || || |||||||| || Sbjct 53307384 CCGCCCCTCAAACGAAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCT 53307443 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || |||||||| | | || || || || ||| Sbjct 53307444 AATGTCCGGCCATCCTCTAGCTGCTTGCCGGCAAATATGAGTCTTTGCTGGTCTGGAGGA 53307503 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || ||||| || ||| | || | || || || | || || Sbjct 53307504 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCGGAGCTCTCAACC 53307563 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| | || ||||| || | || || ||||| |||||||| Sbjct 53307564 TCAAGAGTAATAGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 53307610 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||| || || || ||||||||||| || | || | | |||| || | ||| Sbjct 53307180 TGAAGAGTAGACTCCTTCTGGATATTGTAATCAGCCAATGTACGGCCATCCTCAAGCTGC 53307239 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| || || || || ||||| || ||||| ||||| ||| Sbjct 53307240 TTTCCGGCAAAGATAAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATCTTT 53307299 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||||| | || || || ||||| | || || || || Sbjct 53307300 GCCTTCACATTGTCAATGGTGTCAGAGCTCTCGACCTCCAGAGTTATGGTCTTCCCTGTA 53307359 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| || ||||| Sbjct 53307360 AGTGTCTTAACAAAGATTTGCAT 53307382 >seq1 Length=75119905 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| ||||| || || ||||||||||| || | || | | |||| || | ||||| || Sbjct 28210048 GGTGGATTCCTTCTGGATATTGTAATCTGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCC 28209989 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 || || || | ||||| || || || |||||||| || ||||| || || ||| || Sbjct 28209988 AGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTTGCCTT 28209929 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 ||| | || | |||||||| | || || || ||||||| || |||||||||| || Sbjct 28209928 CACATTGTCGATCGTGTCAGAGGACTCAACCTCCAGAGTGATGGTCTTGCCGGTTAGGGT 28209869 Query 101452 TTTTACAAATATCTGCATG 101470 || || || ||||||||| Sbjct 28209868 CTTGACGAAGATCTGCATG 28209850 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || || || || || | || | ||||| | | ||| Sbjct 55138355 TGCAGGGTGGACTCTTTCTGAATGTTATAGTCTGCCAAGGTGCGCCCATCGGCGAGCTGC 55138414 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||| || || || |||||||| || |||||||| ||||| Sbjct 55138415 TTCCCGGCGAAGATAAGACGCTGCTGGTCTGGAGGAATGCCCTCCTTATCTTGGATTTTC 55138474 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||||||| | || || |||||||| | || ||||| || Sbjct 55138475 GCCTTCACGTTATCGATAGTGTCAGATGACTCAACCTCAAGAGTAATTGTCTTGCCTGTG 55138534 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 55138535 AGGGTCTTCACAAATATCTGCAT 55138557 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| ||||| || || ||||||||||| || | || | | |||| || | ||| Sbjct 27893615 TGCAGGGTGGATTCCTTCTGGATATTGTAATCAGCAAGGGTGCGGCCATCCTCAAGCTGC 27893674 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | ||||| || || || |||||||| || || || || || || Sbjct 27893675 TTGCCGGCGAAGATAAGGCGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATCTTC 27893734 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||||||| || || || || |||| || || || || Sbjct 27893735 GCCTTCACATTATCGATTGTGTCAGACGACTCGACCTCCAGTGTGATTGTCTTCCCTGTC 27893794 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || ||||| ||||||||| Sbjct 27893795 AAGGTCTTGACAAAGATCTGCATG 27893818 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| || || || || ||||||||||| || | || | | || |||| |||||| || Sbjct 27894076 GGTGGACTCCTTCTGGATATTGTAATCTGCCAGGGTGCGACCGTCTTCCAGTTGCTTGCC 27894135 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 ||||| || | ||||| || || || || ||||| || || || || || ||| || Sbjct 27894136 AGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTT 27894195 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 ||| | || | |||||||||| || || || || |||| || ||||| || | || Sbjct 27894196 CACATTGTCGATCGTGTCAGACGACTCGACCTCGAGTGTGATGGTCTTGCCAGTAAGGGT 27894255 Query 101452 TTTTACAAATATCTGCATG 101470 || ||||| || |||||| Sbjct 27894256 CTTCACAAAGATTTGCATG 27894274 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||| || || ||||||||||| || | || | |||| || | || Sbjct 28210282 ATGCAGAGTGGATTCCTTCTGGATATTGTAATCTGCAAGGGTGCGACCATCCTCAAGCTG 28210223 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | ||||| || || || || ||||| || || || || || || Sbjct 28210222 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 28210163 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||||| |||| || || || || || | || ||||| || Sbjct 28210162 CGCCTTGACATTGTCAATTGTGTCGGACGACTCAACCTCCAGGGTAATTGTCTTGCCAGT 28210103 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || || |||||||| ||||||||| Sbjct 28210102 CAAGGTCTTTACAAAGATCTGCATG 28210078 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| || || || ||||| || || |||||||| || | |||| |||| ||| Sbjct 26504403 ACCAAATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAGCTAACGTTCGCCCATCTTCC 26504344 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || ||||| || | | || ||||| || |||||||| ||||| || ||| Sbjct 26504343 AATTGCTTTCCAGCAAAAATTAGCCTTTGCTGATCCGGGGGAATGCCCTCTTTGTCCTGA 26504284 Query 101381 A 101381 | Sbjct 26504283 A 26504283 >seq4 Length=48772488 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || ||||| ||||| || ||||| || || | ||| | |||| ||| Sbjct 36296445 ACCAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAGTCAGCAAGAGTGCGTCCATCTTCC 36296386 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 || ||||| || |||||||||| ||||||||||| || ||||| ||||| || || || Sbjct 36296385 AACTGCTTGCCAGCAAATATCAGCCGCTGTTGATCCGGAGGAATCCCTTCCTTGTCCTG 36296327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278264769996