Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 251 1e-61 >seq1 Length=75119905 Score = 251 bits (278), Expect = 1e-61 Identities = 580/865 (67%), Gaps = 23/865 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || ||||||| ||| Sbjct 54132631 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTC 54132690 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCAT--CTGTTCCAGC 47956 ||| || ||| |||||| | ||| |||| | | |||| | || ||| Sbjct 54132691 CATCCAGTCGAACGGGTTGACGGCGTTGTACATCTTGCTGCACCCCAGAGCCGTG--AGC 54132748 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | |||||| | ||||||||| | |||| Sbjct 54132749 AGGCGGTCGGCGACGAACTCGATGTACTGGCCCATGAGTCCGGCGTTCATGCCGACGAGG 54132808 Query 48017 GACACG-GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 | ||| |||| ||| | || |||||| |||| || | ||||| || | || || Sbjct 54132809 G-CACATGGCAGAGCGTCGCAGATGAACTCCCTCTCGATGTCAACGGCGTCGGCGACGAT 54132867 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 || ||||||||||| | | ||| | ||| | | | ||||| | |||||| Sbjct 54132868 CTCGCGGACGCGGGACTCCTCGAGCTTGCCGTTGAGGAGTTCG---TAGAGGAGGCAGGC 54132924 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| | ||||| || ||||| || ||||||| ||||||||||| ||| || || Sbjct 54132925 GAAGTCGCAGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGG 54132984 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | || ||||||||||| || || ||| ||||| |||||||||||||| Sbjct 54132985 CATGAGACCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 54133044 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCC 48314 ||| || ||||| ||| ||| | ||| | |||||| || | || ||||| Sbjct 54133045 CTCGACGCAGGCGAAGGCGACGAGGCGCTCGGC----GAAGCGCTCGCCGCCTTCGATCC 54133100 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 || | | |||| | ||||| || | || | || || | ||| ||||||| Sbjct 54133101 AGCGCATGGACCAGACGGCCTTGCGGCGGACGGCGGGGACGGTGTCGACGGCGCGGAAGA 54133160 Query 48375 ---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 | | ||| ||| | ||||| | ||||| ||||||| | |||||||| Sbjct 54133161 GGCGGTCCTT---CTCGGCGGCGTCGCGGATGTAGGTCTCGAGCAGCAGGGAGTACATCT 54133217 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||||| ||||||||||| | |||||| ||||| Sbjct 54133218 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCCACCT 54133277 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 |||| || | ||| | || ||||| || || || || || || || | Sbjct 54133278 GCACGTCGGACATGAACCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGA 54133337 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG---CATTCCAGC 48608 ||||||| || || || | ||| |||||||||| | ||| ||| | | | |||| Sbjct 54133338 AGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGGAGAGCGTCTCGTCCCAGT 54133397 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | |||| | |||||||| || || | |||||||||||||| | || || | Sbjct 54133398 GGCGCGCGTCCGAGGAGAGGTCCACCTCCTCGGCCGTCCAGAAGGACGCCACCGCCTTCT 54133457 Query 48669 TGTACATGCCCCATATGTCCGGATA 48693 |||| | |||| || | ||| || Sbjct 54133458 TGTAGAACTCCCAGATCTGCGGGTA 54133482 Score = 214 bits (236), Expect = 3e-50 Identities = 563/848 (66%), Gaps = 31/848 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| ||||| || ||||| |||| || ||||| ||| Sbjct 42406483 CTGGTAGTCTCCAACACGCTTCTCGAAGAAATTGGTCTTTCCCTGCAGGGAGATCAGCTC 42406424 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||| | | ||| |||| | | || ||| |||| | ||| Sbjct 42406423 CATCCAGTCGAATGGGTTTGTGGCGTTGTACATCTTCTTG-CAG-CCCAGCGCCATGAGC 42406366 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | ||||||||| |||||||||| | ||| ||| | ||||||||| | ||| Sbjct 42406365 AGGCGGTCCGCGACGAACTCGATGTACTGGCTCATAAGGTCGCCGTTCATGCCCACGAGA 42406306 Query 48017 GA-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 | || ||| | || | || ||||||| |||| || | ||||| || || || || Sbjct 42406305 GCGCAAGGG-AGCGCGTCGCAGACAAACTCCCTCTCGATGTCAACGGCGTCGCCGACGAT 42406247 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 || ||||| ||||| | ||| | || ||| || | ||||| | |||||| Sbjct 42406246 CTCACGGACGCGTGACTCGTCCAGCTTGCTCCGGAGGA---TGTCGTAGAGGAGGCAGGC 42406190 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| | ||||| ||||||||| ||| ||| ||| |||||||||| || || || Sbjct 42406189 AAAGTCGCAGTGCAGGCCTTCGTCGCGGGAGATAAGCTCGTTGGAGAAAGTTAGGCCCGG 42406130 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | || ||||||||||| || || ||| ||||| |||||||| || || Sbjct 42406129 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAATATCCC 42406070 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCC 48314 ||| || ||||| ||| || | ||| | ||||| || | | ||||| Sbjct 42406069 CTCGACGCAGGCGAAGGCGACCAGGCGCTCGGC----AAAGCGCTCGCCGCCGTCGATCC 42406014 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGG 48370 || | ||||| || ||||| | ||| ||| || || || | ||| ||| Sbjct 42406013 AGCGCATGGCCCATTCGGCCTT----GCGGCGCACGGCGGGGATGGTGTCGACGGCGCGG 42405958 Query 48371 AAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 || | | | ||| ||| | | ||| | ||||| || ||| | |||| Sbjct 42405957 AAAAGACGGTCCTT---CTCGACGTCCTCCCGGATGTAGGTCTCGATAAGCAGGGAGTAC 42405901 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 ||||||||||| | ||||| || ||||||||||| ||||||||||| | |||||| Sbjct 42405900 ATCTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCG 42405841 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 ||||| || || | ||| | | || ||||| ||| || || || || || Sbjct 42405840 ACCTGGACGTCGGACATGAACCGGGACGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCG 42405781 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTC 48604 || |||||||| || || || | ||| |||||||||| || || || | | | Sbjct 42405780 GCGAAGAAGGCGAGCACGTGGGAGACGAAGTGGCGCTCGTCGTTGGACAGCGTGGTGTCC 42405721 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| | |||| | |||||||| || ||| | |||||||||||||| | || Sbjct 42405720 CAGTGGCGCGCGTCGGAGGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGACGCCACCGCC 42405661 Query 48665 TTTTTGTA 48672 || ||||| Sbjct 42405660 TTCTTGTA 42405653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532473963520