Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 188 1e-42 >seq1 Length=75119905 Score = 188 bits (208), Expect = 1e-42 Identities = 560/857 (65%), Gaps = 27/857 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||| ||||| ||| | || || Sbjct 54133473 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTGGACCTC 54133414 Query 25537 GCCAAGGACATGGACGGCTGGTACG---CTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || |||| | | |||| ||| | || ||| ||||||| || || || Sbjct 54133413 TCCTCGGACGCGCGCCACTGGGACGAGACGCTCTCCCCCGACGAGCGCCACTTCATCTCC 54133354 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| |||||| || | | Sbjct 54133353 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCCGG 54133294 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| | |||||| |||||||| |||||||| |||||| Sbjct 54133293 TTCATGTCCGACGTGCAGGTGGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATC 54133234 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| || ||| || ||| ||||| |||| |||| Sbjct 54133233 GAGAACATCCACTCGGAGATGTACTCCCTGCTGCTCGAGACCTACATCCGCGACGCCGCC 54133174 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| || || || || | ||| |||| | | ||| | || | ||||| Sbjct 54133173 GAGAAGGACCGCCTCTTCCGCGCCGTCGACACCGTCCCCGCCGTCCGCCGCAAGGCCGTC 54133114 Query 25834 TGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||| ||||| |||||| | || ||||||| || |||||| || || ||||| Sbjct 54133113 TGGTCCATGCGCTGGATCGAAGGCGGCGAGCGCTTCGC----CGAGCGCCTCGTCGCCTT 54133058 Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 || ||| || ||||||||||| ||| || || || |||| ||||||||||||||||| Sbjct 54133057 CGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAG 54133000 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || |||||| ||||| ||| ||||||||||||||| | |||||||| Sbjct 54132999 AAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGG 54132940 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 || ||| | || || |||||||| |||||| | | | | | ||| | || | Sbjct 54132939 CTGCACTGCGACTTCGCCTGCCTCCTCTAC---GAACTCCTCAACGGCAAGC--TC-GAG 54132886 Query 26071 GAGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 ||| | |||| | ||| || || || || || ||||||| |||||| Sbjct 54132885 GAGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTTGACATCGAGAGGGAGTTCATCTGC 54132826 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 | ||||||||| | |||||||| |||| ||||| ||| Sbjct 54132825 GACGCTCTGCCATGTGCCCTCGTCGGCATGAACGCCGGACTCATGGGCCAGTACATCGAG 54132766 Query 26188 TATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTC-GCCAGACTCTACAGTACGCC--T 26244 | || ||||||| ||||| ||||| | || ||| | |||| ||||| Sbjct 54132765 TTCGTCGCCGACCGCCTGCTCACGGCTCTGGGGTGCAGCAAGA-TGTACA--ACGCCGTC 54132709 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||||||||||| ||||| ||| ||| || | || |||||||||||||| || ||| Sbjct 54132708 AACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAG 54132649 Query 26305 AGGGTCGGCGACTATCA 26321 | ||||||||||| || Sbjct 54132648 CGCGTCGGCGACTACCA 54132632 Score = 159 bits (176), Expect = 6e-34 Identities = 332/482 (69%), Gaps = 13/482 (3%) Strand=Plus/Plus Query 25564 CTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGAT 25623 || ||||| ||||||| || || || ||||| | || ||||| || ||||| || Sbjct 42405731 CTGTCCAACGACGAGCGCCACTTCGTCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGAC 42405790 Query 25624 GGTATAGTGAACGAGAATCTGTGCGAGA-GATTCACCAGGGAAGTGCAGTACGTGGAGGC 25682 || || || |||||| || ||| | |||| || || ||| || ||||| Sbjct 42405791 GGCATCGTCCTCGAGAACCTC-GCGTCCCGGTTCATGTCCGACGTCCAGGTCGCCGAGGC 42405849 Query 25683 CAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAA 25742 | |||||||| |||||||| |||||||| || | ||||||||| |||| || Sbjct 42405850 CCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCTGAGATGTACTCCCT 42405909 Query 25743 GCTTCTGATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGA 25802 |||| | ||| ||||| || | || ||||| || || || || | ||| |||| Sbjct 42405910 GCTTATCGAGACCTACATCCGGGAGGACGTCGAGAAGGACCGTCTTTTCCGCGCCGTCGA 42405969 Query 25803 GCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GA 25861 ||| ||| | | | ||||| ||||||||| |||||| || || || Sbjct 42405970 CACCATCCCCGCCGTGCGCCGCAAGGCCGAATGGGCCATGCGCTGGATCGACGGCGGCGA 42406029 Query 25862 GCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGC 25920 ||||| ||| |||||| ||||| ||||| || ||| || ||||| || || ||| Sbjct 42406030 GCGCT----TTGCCGAGCGCCTGGTCGCCTTCGCCTGC-GTCGAGGGGATATTCTTCTCG 42406084 Query 25921 GGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTT 25979 || || || |||| ||||||||||||||||| || || |||| |||||| |||| Sbjct 42406085 GGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATG-CCGGGCCTAACTT 42406142 Query 25980 T-TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 | ||||||||||| ||| | | ||||| || || ||| | || ||||||||||| |||| Sbjct 42406143 TCTCCAACGAGCTTATCTCCCGCGACGAAGGCCTGCACTGCGACTTTGCCTGCCTCCTCT 42406202 Query 26039 AC 26040 || Sbjct 42406203 AC 42406204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844474904320