Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 150 1e-30 seq3 111 1e-18 seq2 91.5 1e-12 seq4 89.7 3e-12 >seq1 Length=75119905 Score = 150 bits (166), Expect = 1e-30 Identities = 533/819 (65%), Gaps = 18/819 (2%) Strand=Plus/Minus Query 475364 GCAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCAT 475421 ||||||||||| || | || |||||||| || || ||||| ||| | || || | || Sbjct 2511570 GCAACAGCTGGTGACACTCACCTTGGTGGGGAGGACTTTGACAATCGCCTGGTTAACCAC 2511511 Query 475422 GGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGTTGATCTTTCAACATCTGCTAAAGC 475479 | ||| |||| || ||||||||| | || || ||| | | | | | | | Sbjct 2511510 --TTTGTCCAAGAATTTAAGAGGAAACACAAGAAGGATATCAGTGGAAACC--CCAGGTC 2511455 Query 475480 ATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCA 475539 || || | || || ||| | ||||| | || ||| || | |||||||| | | || Sbjct 2511454 TTTGAGGAGGCTCAGGACTTCATGTGAGAGGGCGAAGAGAACGCTTTCTTCCACAGCCCA 2511395 Query 475540 AACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAG 475599 |||||| | ||| ||||||| || | |||||| |||||| || | || || || Sbjct 2511394 AACTACCATCGAAATTGATTCCCTCTATGAAGGTGTTGATTTCTATTCCACGATCACCAG 2511335 Query 475600 GGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACA 475659 ||| | ||||| || || || ||||| || || || || || || || | Sbjct 2511334 GGCCAGGTTTGAGGAGCTTAACATGGACCTCTTCAGGAAGTGCATGGAGCCTGTGGAG-A 2511276 Query 475660 AGTTC-TCAGAGATTCTAAACTTGACAA-ATCACAAGTCCATGAAATTGTTCTTGTAGGA 475717 ||| | | || ||| | || | ||||| | ||| | ||||||| |||| ||||| || Sbjct 2511275 AGTGCCTGAGGGATGCCAAGATGGACAAGAGCACTA-TCCATGATGTTGTCCTTGTTGGT 2511217 Query 475718 GGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAAA 475776 ||||| || ||||| || | | | | |||| || | | || ||||| || | Sbjct 2511216 GGTTCTACTAGAATCCCTAGAGTTCAGCAGCTGCTG-CAGGACTTCTTCAATGGGAAGGA 2511158 Query 475777 GTTAAATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCA 475834 | || ||| | | || |||||||| |||||||| ||||| ||||||||||| || Sbjct 2511157 ACTC--TGCAAGAGCATTAACCCTGATGAGGCTGTTGCCTATGGTGCTGCTGTCCAGGCT 2511100 Query 475835 GCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACT 475894 ||||| | ||| | | ||||| | | | || | || |||| || ||| Sbjct 2511099 GCTATCCTTAGTGGTGAGGGGAATGAGAAGGTGCAGGACCTTCTCCTCCTTGATGTGACT 2511040 Query 475895 CCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAAT 475954 ||||| || | |||||||| || | ||| || |||||||| || || || || Sbjct 2511039 CCACTGTCTCTTGGTCTTGAGACTGCTGGTGGAGTTATGACTGTGCTCATCACAAGGAAC 2510980 Query 475955 ACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACT 476014 || | || || ||| || | || || ||||| || |||||||| || | | Sbjct 2510979 ACCACCATTCCTACCAAGAAGGAGCAGGTCTTCTCCACCTACTCTGATAACCAGCCTGGT 2510920 Query 476015 GTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGA 476074 ||| ||||| | ||||| ||||| || | | |||| || || || ||||| Sbjct 2510919 GTATTGATCCAGGTGTTTGAGGGTGAGAGGACAAGGACTAGGGACAACAATCTCCTTGGC 2510860 Query 476075 ACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACT 476134 | ||| | ||| || || || ||||||||||| || |||||||| || || Sbjct 2510859 AAGTTTGAACTTTCTGGAATCCCGCCTGCTCCCAGGGGTGTTCCTCAGATCACTGTCTGC 2510800 Query 476135 TTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 || || |||||||| ||||||||||| || || ||||| Sbjct 2510799 TTCGACATTGATGCCAATGGTATTCTGAACGTCTCTGCT 2510761 Score = 114 bits (126), Expect = 8e-20 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG 474706 || || |||||| | ||| |||||||||| |||||| | ||| ||| | | || Sbjct 2511903 AAGCAGTTTTCAGCTGAAGAAATTTCTTCCATGGTTCTTATCAAGATGCGTGAGATTGCT 2511844 Query 474707 --AGCTCATATCTTGGAC-AAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTT 474763 |||| || || ||| || | ||| |||| || | |||||||| || || || Sbjct 2511843 GAAGCT--TACCTAGGAGTAACTATTAAGA-ATGCTGTTGTCACTGTTCCTGCTTACTTC 2511787 Query 474764 AATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTA 474823 |||||||| || | || |||||||| ||||| || ||||| ||||||||||| | Sbjct 2511786 AATGATTCCCAGAGGCAGGCAACTAAGGATGCTGGTGTTATTGCTGGTCTTAATGTCATG 2511727 Query 474824 CGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||||| || || || ||||| ||||| ||| |||| ||||||||||| ||||| Sbjct 2511726 CGTATCATCAACGAGCCAACTGCAGCTGCAATTGCCTATGGTCTTGACAAGAA 2511674 Score = 104 bits (114), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG 474706 || || | ||||||| || ||| | || | ||| | |||| ||||| |||| || Sbjct 74171232 AAGCAGTATTCACCGAGCCAGATTGGTGCATTTGTTCTGACCAAGATGAAGGAAACAGCT 74171173 Query 474707 AGCTCATATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAA 474765 || || ||||| |||| | || | || || |||||||||||||| ||||| || Sbjct 74171172 GAATCTTACCTTGG-CAAGTCTATTACCAAGGCTGTGATTACTGTTCCAGCTTATTTCAA 74171114 Query 474766 TGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACG 474825 |||| |||| || || || ||||| ||||| || | ||||| || ||| |||| | | Sbjct 74171113 TGATGCTCAGCGGCAGGCCACTAAGGATGCTGGCCGTATTGCTGGACTTGATGTCGAAAG 74171054 Query 474826 TATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 || |||||||||||||| || || || ||| |||| || Sbjct 74171053 GATCATTAATGAACCAACTGCTGCTGCTCTTTCTTACGG 74171015 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || || ||||| || || || | || || || || || || Sbjct 28416485 ACGGAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGT 28416426 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||| ||||| ||||| || || ||||| || || || || || || || Sbjct 28416425 GCGGCCATCCTCAAGCTGCTTACCAGCGAATATGAGACGCTGCTGGTCTGGGGGGATGCC 28416366 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || ||||| || ||| |||||||| |||| || | || ||||| Sbjct 28416365 TTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATAGTGTCAGATGACTCAA-CTTCAA 28416307 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || ||||| ||||| ||||| || || Sbjct 28416306 GCGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTG 28416267 >seq3 Length=59935730 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || ||||| || || ||| ||||| || | ||||| || || || Sbjct 13693260 ACGCAGACGAAGGACAAGGTGTAGGGTAGACTCTTTCTGAATGCTGTAATCCGCCAGGGT 13693201 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || ||||| ||||| |||||||| || || || || || ||||| || || || Sbjct 13693200 GCGCCCGTCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCC 13693141 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||||||||||| |||||| ||||| ||||| | || | | | ||| Sbjct 13693140 TTCCTTGTCTTGAATCTTTGCCTTGACATTGTCAATCGTATCCGATGACTCGACCTCCAA 13693081 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || |||||||| ||||| ||||| || || Sbjct 13693080 -AGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTG 13693042 Score = 100 bits (110), Expect = 2e-15 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 480557 ACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTT 480616 ||| || ||||| ||||| ||| || || | || |||||||||| || | | Sbjct 53307395 ACGAAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCTAATGTCCGGCC 53307454 Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||| || ||||| || || | ||| || || |||||||| |||||||| Sbjct 53307455 ATCCTCTAGCTGCTTGCCGGCAAATATGAGTCTTTGCTGGTCTGGAGGAATGCCTTCCTT 53307514 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAA 480735 ||| || || || || ||| ||||| ||||| | | | | || ||||| |||| Sbjct 53307515 GTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCGGAGCTCTCAA-CCTCAAGAGTAA 53307573 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || ||||| |||||||| || || || Sbjct 53307574 TAGTCTTGCCAGTGAGGGTCTTAACAAAGATCTG 53307607 Score = 98.7 bits (108), Expect = 6e-15 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| || || ||| ||||| || ||| || || || | || Sbjct 13692804 ACGCAGACGGAGGACAAGGTGCAGGGTAGACTCTTTCTGAATATTGTAGTCCGCCAAGGT 13692745 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| ||||| | ||| || || || |||||||| || || || |||||||| || Sbjct 13692744 GCGACCATCCTCAAGCTACTTCCCGGCGAAGATAAGACGCTGCTGGTCCGGAGGAATGCC 13692685 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| |||||||| ||| || ||| || || || |||| || | | | ||| Sbjct 13692684 CTCCTTATCTTGAATTTTTGCCTTCACATTATCGATCGTGTCAGATGACTCGACCT-CAA 13692626 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||| || || || ||||| ||||| || ||||| || Sbjct 13692625 GGGTAATTGTCTTGCCAGTGAG-GTCTTCACAAAAATCTG 13692587 Score = 86.0 bits (94), Expect = 4e-11 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || ||||| || || || ||||| || ||||| || |||| || | Sbjct 13693031 CGCAGACGAAGGACAAGGTGCAGGGTGGACTCTTTTTGAATGTTATAGTCTGCTA-AGGT 13692973 Query 480612 CTGTT-ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||| ||||| ||||| |||||||| || || || || || || || || || || Sbjct 13692972 GTGCCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATGCC 13692913 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||||||||| |||||| || || || |||| | | || | ||| Sbjct 13692912 CTCCTTGTCTTGAATCTTTGCCTTGACATTATCTATCGTGTCAGAAGATTCAACCTCCAA 13692853 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || ||||| || ||||| || Sbjct 13692852 -AGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAAATCTG 13692814 Score = 86.0 bits (94), Expect = 4e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 290842 AGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATC 290901 ||| || |||||||| || || || ||| |||||||| || |||||| | | ||| Sbjct 57128931 AGCAGCGGTTGGTTCGTTGATGATCCTTTGGACATCAAGTCCAGCAATTCGACCAGCATC 57128872 Query 290902 TAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTTT 290958 ||||||||| || || |||||||| ||||||||||| ||||| || ||||| || Sbjct 57128871 CTTAGTTGCCTGACGCTGAGCATCATTGAAATAAGCAGGAACTGTTATCACAGCCTT 57128815 >seq2 Length=59384932 Score = 91.5 bits (100), Expect = 1e-12 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 476084 CTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATT 476143 || || || |||||||||||||| | || ||||| ||||||||||| | || |||||| Sbjct 30226951 CTGGATGGAATTCCTCCTGCTCCGCGTGGTGTTCCGCAAATTGAAGTGAAGTTCGATATT 30226892 Query 476144 GATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| |||||||| ||| |||| ||||| |||||| Sbjct 30226891 GATGCCAATGGTATCCTTTCTGTTGCTGCTGTTGATAA 30226854 >seq4 Length=48772488 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| ||||| || ||||| || || | || || || || |||| Sbjct 3418820 ATGCCGTTGTCACTGTTCCTGCATACTTCAATGACTCGCAGAGGCAGGCCACCAAGGATG 3418879 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| || | |||||| | ||||| || || || ||||| || || || Sbjct 3418880 CTGGTGTCATTGCTGGCATCAATGTTCTGCGTATCATCAACGAGCCAACTGCTGCTGCCA 3418939 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 3418940 TTGCTTATGGTCTTGACAAGAA 3418961 Score = 89.7 bits (98), Expect = 3e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| | ||||||||||| || || ||||| || || | |||||| |||||||| Sbjct 44200231 GCAGTGGTCACTGTTCCAGCCTACTTCAATGACTCACAGAGAACAGCAACAAAAGATGCT 44200172 Query 474797 GGAAGAATTGCAGGTCTTA-ATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACT 474855 || | |||||||| |||| | ||| | || ||||| ||||| || || || || | || Sbjct 44200171 GGTCGTATTGCAGG-CTTAGAAGTTCTTCGCATTATAAATGAGCCGACTGCTGCATCCCT 44200113 Query 474856 TGCTTATGGTCTTGATAAGAA 474876 ||||||||| |||| ||||| Sbjct 44200112 GGCTTATGGTTTTGAGAAGAA 44200092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177998944144