Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq28 551 2e-152 seq4 536 4e-148 seq5 515 1e-141 seq1 435 9e-118 seq3 232 2e-56 >seq28 Length=135199 Score = 551 bits (610), Expect = 2e-152 Identities = 720/986 (73%), Gaps = 18/986 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||||| |||||||| ||||||||||| |||||||| ||||| | ||||| || Sbjct 125 AGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 184 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 185 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACA-- 242 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||||||||| || || || |||||||| || || | || || Sbjct 243 -GATTGGTTGAAATTGAATCCATTTAGGTTGAACGCCATAGTACTAATACCTAAAGCAGT 301 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || |||||||||||||||||||| |||| | | ||||| Sbjct 302 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 361 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || ||||||||||| Sbjct 362 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATA 421 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 |||||||| ||||| |||||||| || || | || ||| ||| ||||| ||||| Sbjct 422 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTC 481 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 482 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 538 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 ||| || || || ||||| | ||| || || |||||||||||||| ||||| ||||| || Sbjct 539 GAAAACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCGGCCTG 598 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | ||| || ||||||||||| || || | |||||||||||||||||| || Sbjct 599 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAGCT 658 Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGA 18424 ||||| |||| ||| |||| | ||||| || || || |||||||| || || || || Sbjct 659 TCCTTGACCAATAGGGTAAATCAAGAAA-AC--AGCAGTCGCAGCTGCAACAGGAGCTGA 715 Query 18425 ATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 18484 ||| |||||| |||||| ||||||||||| | | ||||||||||||| | || || Sbjct 716 ATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGACC 775 Query 18485 CATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 18544 ||| ||| || | || | | ||||| | ||||| || | ||| || || || || Sbjct 776 CATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATT 835 Query 18545 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604 |||||||| || || | || |||||||||||| |||||||| ||||| | |||||||| Sbjct 836 GTATAACCATTCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATTGC 895 Query 18605 GTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGA 18664 ||| | || | || || || || || || ||||||||||| ||||| | || || Sbjct 896 CGCAGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGA 955 Query 18665 GACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAA 18724 |||||||| ||||||||||| || || || ||||| || || | || || || | ||| Sbjct 956 AACAGGCTCGCGAATACCATCAATATCTACTGGAGGGGCTGCGATGAAGGCGATAATAAA 1015 Query 18725 TGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAG 18784 | | | || |||||| || | | ||||||||| | || || ||||| || | ||| || Sbjct 1016 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAG 1075 Query 18785 GCGGTTGTTTGTACTCGTAACCCAGT 18810 || || | || || || | ||||| Sbjct 1076 ACGATTTTCAGTGCTAGTTATCCAGT 1101 >seq4 Length=48772488 Score = 536 bits (594), Expect = 4e-148 Identities = 717/986 (73%), Gaps = 18/986 (2%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||||| |||||||| ||||||||||| |||||||| ||||| | ||||| || Sbjct 22676633 AGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 22676574 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 22676573 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACA-- 22676516 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||||||||| || || || |||||||| || || | || || Sbjct 22676515 -GATTGGTTGAAATTGAATCCATTTAGGTTGAACGCCATAGTACTAATACCTAAAGCAGT 22676457 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || |||||||||||||||||||| |||| | | ||||| Sbjct 22676456 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 22676397 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || ||||||||||| Sbjct 22676396 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATA 22676337 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 |||||||| ||||| |||||||| || || | || ||| ||| ||||| ||||| Sbjct 22676336 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTC 22676277 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 22676276 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 22676220 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 || || || || ||||| | ||| || || |||||||||||||| ||||| || || || Sbjct 22676219 AAAAACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCTGCCTG 22676160 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | ||| || ||||||||||| || || | |||||||||||||||||| || Sbjct 22676159 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAGCT 22676100 Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGA 18424 ||||| |||| ||| |||| | ||||| || || || |||||||| || || || || Sbjct 22676099 TCCTTGACCAATAGGGTAAATCAAGAAA-AC--AGCAGTCGCAGCTGCAACAGGAGCTGA 22676043 Query 18425 ATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 18484 ||| |||||| |||||| ||||||||||| | | ||||||||||||| | || || Sbjct 22676042 ATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTCACGACC 22675983 Query 18485 CATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 18544 ||| ||| || | || | | ||||| | ||||| || | ||| || || || || Sbjct 22675982 CATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATT 22675923 Query 18545 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604 |||||||| || || | || |||||||||||| |||||||| ||||| | |||||||| Sbjct 22675922 GTATAACCATTCATCAACGGATGCAGCTTCCCAAATTGGGTACAAGTGCAATCCGATTGC 22675863 Query 18605 GTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGA 18664 ||| | || | || || || || || || ||||||||||| ||||| | || || Sbjct 22675862 CGCAGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGA 22675803 Query 18665 GACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAA 18724 | |||||| ||||||||||| || || || ||||| || || | || || || | ||| Sbjct 22675802 AATAGGCTCGCGAATACCATCAATATCTACTGGAGGGGCTGCGATGAAGGCGATAATAAA 22675743 Query 18725 TGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAG 18784 | | | || |||||| || | | ||||||||| | || || ||||| || | ||| || Sbjct 22675742 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAG 22675683 Query 18785 GCGGTTGTTTGTACTCGTAACCCAGT 18810 || || | || || || | ||||| Sbjct 22675682 ACGATTTTCAGTGCTAGTTATCCAGT 22675657 Score = 98.7 bits (108), Expect = 3e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 18030 GGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAG 18089 ||||||||||||||||| || |||| | | ||| || |||||||| |||||| Sbjct 45407042 GGCCAAGCAGCCAAGAAAAAGTGTAAAGAAGGAGAGTCGTTGAAACTAGCATATTGGAAG 45407101 Query 18090 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCA 18149 || | || ||||| || |||||| || ||||||||||| |||||||| ||||| ||| Sbjct 45407102 ATTAATCGGCCAAAATAAATATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCA 45407161 Query 18150 AATTTATATCCATAGTT 18166 ||||| || || | ||| Sbjct 45407162 AATTTGTAACCCTCGTT 45407178 >seq5 Length=28563423 Score = 515 bits (570), Expect = 1e-141 Identities = 715/987 (72%), Gaps = 21/987 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||||| |||||||| ||||||||||| |||||||| ||||| | ||||| || Sbjct 14558566 AGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 14558625 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 14558626 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACACGACCTTGACTATCAACTACA-- 14558683 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||||||||| || || || ||||||| || || | || || Sbjct 14558684 -GATTGGTTGAAATTGAATCCATTTAGGTTGAACCCCATAGTACTAATACCTAAAGCAGT 14558742 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA-TTGT 18069 | ||| || | || |||||||||||||||||||| |||| | | | | |||| Sbjct 14558743 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACAGAGAGTTGT 14558802 Query 18070 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTAT 18129 | || |||||||| |||||||| | || ||||| || ||||||||||| |||||||||| Sbjct 14558803 TGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCCGCCACAATATTAT 14558862 Query 18130 ACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTT 18189 | |||||||| ||||| |||||||| || || | || ||| ||| ||||| |||| Sbjct 14558863 AAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTT 14558922 Query 18190 CTCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCAC 18246 | || || || | |||| || |||| || ||||||||| ||||| | || | Sbjct 14558923 CCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGC 14558979 Query 18247 CGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTT 18306 |||| || || || ||||| | ||| || || | |||||||||||| ||||| || || | Sbjct 14558980 CGAAAACACCAGCTACACCTAACATGTGAAATG-ATGCATAAGGATGTTGTGCTCTGCCT 14559038 Query 18307 GGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAAC 18366 ||||||| | ||| || || |||||||| || || | |||||||||||||||||| | Sbjct 14559039 GGAATACAATCATAAAGTTTAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAGC 14559098 Query 18367 TCCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGG 18423 | ||||| |||| ||| |||| | ||||| || || || |||||||| || || || | Sbjct 14559099 TTCCTTGACCAATAGGGTAAATCAAGAAA-AC--AGCAGTCGCAGCTGCAACAGGAGCTG 14559155 Query 18424 AATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTC 18483 |||| |||||| |||||| ||| ||||||| | | ||||||||||||| | || | Sbjct 14559156 AATATGCAACAACAATCCAAGGGTGCATACCAAACGGA-AACTAAGTTCCCACTCACGAC 14559214 Query 18484 CCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGT 18543 |||| ||| || | || | | ||||| | ||||| || | ||| || || || | Sbjct 14559215 CCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCAT 14559274 Query 18544 TATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTG 18603 | ||||| || || || | || ||||||||| || |||||||| ||||| | ||||||| Sbjct 14559275 TGTATAATCATTCATCAACGGATGCAGCTTCTCAAATTGGGTAAAAGTGCAATCCGATTG 14559334 Query 18604 CGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTG 18663 | ||| | || | || || || || || || ||||||||||| ||||| | || | Sbjct 14559335 CCGCAGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAG 14559394 Query 18664 AGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAA 18723 | |||||||| ||||||||||| || || || ||||| || || | || || || | || Sbjct 14559395 AAACAGGCTCGCGAATACCATCAATATCTACTGGAGGGGCTGCGATGAAGGCGATAATAA 14559454 Query 18724 ATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGA 18783 || | | || |||||| || | | ||||||||| | || || ||||| | | ||| | Sbjct 14559455 ATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCTGATGTAAA 14559514 Query 18784 GGCGGTTGTTTGTACTCGTAACCCAGT 18810 | || || | || || || | ||||| Sbjct 14559515 GACGATTTTCAGTGCTAGTTATCCAGT 14559541 >seq1 Length=75119905 Score = 435 bits (482), Expect = 9e-118 Identities = 570/780 (73%), Gaps = 12/780 (2%) Strand=Plus/Plus Query 18037 CAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTC 18096 ||||||||||||| |||| | | ||||| || |||||||| |||||||| | || Sbjct 3928918 CAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATC 3928977 Query 18097 TCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTAT 18156 ||||| || |||||||| || ||||||||||| |||||||| ||||| |||||||| | Sbjct 3928978 GGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTGT 3929037 Query 18157 ATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAAT--AAGT-GAGGAAGTAACAA 18213 | || | || ||| ||| ||||| ||||| || || || | |||| || ||| Sbjct 3929038 AACCCTCATTAGCAGATTCATTTTCAGTAGTTTCCCTGATCAAACTAGAGGT--TACCAA 3929095 Query 18214 GACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATAT 18273 | || ||||||||| ||||| | || ||||| || || || ||||| | ||| | Sbjct 3929096 GGAA-CCATGCATAGCACTGAATAGGGAACCGCCGAAAACACCAGCTACACCTAACATGT 3929154 Query 18274 GGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTAC 18333 | || |||||||||||||| ||||| || || |||||||| | ||| || |||||||||| Sbjct 3929155 GAAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTGAAAGTAC 3929214 Query 18334 CGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGA 18392 | || || | |||||||||||||||||| || ||||| |||| ||| |||| | ||| Sbjct 3929215 CAGATATTCCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCAATAGGGTAAATCAAGA 3929274 Query 18393 AATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCA 18450 || || || || |||||||| || || || ||||| |||||| |||||| ||||||| Sbjct 3929275 AA-AC--AGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCA 3929331 Query 18451 TACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAA 18510 |||| | | ||||||||||||| | || ||||| ||| || | || | | | Sbjct 3929332 TACCCAAACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGA 3929391 Query 18511 AGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAG 18570 |||| | ||||| || | ||| || || || || |||||||| || || | || ||||| Sbjct 3929392 AGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACGGATGCAG 3929451 Query 18571 CTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTG 18630 ||||||| |||||||| ||||| | |||||||| ||| | || | || || || | Sbjct 3929452 CTTCCCAAATTGGGTAAAAGTGCAATCCGATTGCCGCAGAAGTAGGAATAATAGCACCAG 3929511 Query 18631 ATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGT 18690 | || || ||||||||||| ||||| | || || |||||||| ||||||||||| || | Sbjct 3929512 AGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCGCGAATACCATCAATAT 3929571 Query 18691 CAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAG 18750 | || ||||| || || | || || || | |||| | || |||||| || | | || Sbjct 3929572 CTACTGGAGGGGCTGCGATGAAGGCGATAATAAATACAAAAGTTGCGGTCAATAAGGTAG 3929631 Query 18751 GGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGT 18810 ||||||| | || || ||||| || | ||| || || || | || || || | ||||| Sbjct 3929632 GGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGTGCTAGTTATCCAGT 3929691 >seq3 Length=59935730 Score = 232 bits (256), Expect = 2e-56 Identities = 323/447 (72%), Gaps = 12/447 (3%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||||| |||||||| ||||||||||| |||||||| ||||| | ||||| || Sbjct 16822137 AGCTAGATCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 16822078 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 16822077 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACA-- 16822020 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||||||||| || || || |||||||| || || | || || Sbjct 16822019 -GATTGGTTGAAATTGAATCCATTTAGGTTGAACGCCATAGTACTAATACCTAAAGCAGT 16821961 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || |||||||||||||||||||| |||| | | ||||| Sbjct 16821960 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 16821901 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || ||||||||||| Sbjct 16821900 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATA 16821841 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 |||||||| ||||| |||||||| || || | || ||| ||| ||||| ||||| Sbjct 16821840 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTC 16821781 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 16821780 CCTGATCAAACTAGAGG--TTACCAAG-GAACCATGCATAGCACTGAATAGGGAACCGCC 16821724 Query 18248 GAATACCCCTGCAACACCGAGCATATG 18274 ||| || || || ||||| | ||| || Sbjct 16821723 GAAAACACCAGCTACACCTAACATGTG 16821697 Score = 100 bits (110), Expect = 9e-17 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 18636 ATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACG 18695 || ||||||||||| ||||| | || || |||||||| ||||||||||| || || || Sbjct 15391200 ATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCGCGAATACCATCAATATCTACT 15391259 Query 18696 GGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATC 18755 ||||| || || | || || || | |||| | | || |||||| || | | ||||||| Sbjct 15391260 GGAGGGGCTGCGATTAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATC 15391319 Query 18756 ATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGT 18810 || | || |||||||| || | ||| || | || | || || || | ||||| Sbjct 15391320 ATCAAAACACCAAACCATCCGATGTAAAGATGATTTTCAGTGCTAGTTATCCAGT 15391374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151318349686632