Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq3 105 3e-18 seq1 86.0 3e-12 >seq3 Length=59935730 Score = 105 bits (116), Expect = 3e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124 ||||||||| || |||||||||||||| || || | |||||| ||||||||||| | Sbjct 55061442 ACCTTTTCTCTTGCCTCCACCTTGATCAACATAGCGTGCAGTATCATTGAAAACACGTAG 55061501 Query 26125 CATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCT 26184 ||| ||||| | |||| | ||| ||| ||||||| |||| | || || | ||| Sbjct 55061502 CATGGGAACAATTCCATTAGAAGTTCCATTTGTGCCTCGAATATAACTCCCAGTAGCTCT 55061561 Query 26185 AATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 ||| | |||| ||| | ||| ||||| ||||| |||| || | || || |||| Sbjct 55061562 AATGTTGTGA-ATTGAGACACCAATTCCTCCAGCAGATTTGCTTATGGAAGCGCATTCTG 55061620 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | | ||||| ||||||| | || ||||| ||||||| Sbjct 55061621 AGAGAGTATCATAAATTCCCTCAATACTATCGTCTTTCAT 55061660 >seq1 Length=75119905 Score = 86.0 bits (94), Expect = 3e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 26059 AAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAAC 26118 ||| ||||| ||||| || ||||||||||||||||| || | ||||| ||||||||||| Sbjct 47004318 AAACCTACCCTTTCTCTTGCCTCCACCTTGATCTACATAACGAGCAGTATCATTGAAAAC 47004259 Query 26119 TTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGT 26178 ||||| ||||| | ||| | || ||| || || | | | || | | || || Sbjct 47004258 ACGTAACATAGGAACAATCCCATTGGATGTTCCATTCGTTCCACGGATATAGCTCCCAGT 47004199 Query 26179 CGATCTAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCAC 26237 | | ||| | |||| | ||| | ||| ||||| ||||| |||| || | |||| Sbjct 47004198 AGCACGAATGTTGTGAAC-TGAGACACCAATTCCTCCAGCAGATTTGCTGATGACAGCAC 47004140 Query 26238 AATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | || | ||||| | || || | ||||||||| ||||||| Sbjct 47004139 ATTCCTTCAGAGTATCATAGATACCCTCAATGCTATCATCTTTCAT 47004094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039913650100