Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 >seq1 Length=75119905 Score = 123 bits (136), Expect = 3e-23 Identities = 305/455 (67%), Gaps = 16/455 (4%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || || || Sbjct 54133081 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 54133022 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| ||||||||||| || || |||||| || || Sbjct 54133021 CTGCGCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAACGA 54132962 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTT 65249 || || || || || ||||| || ||| || || ||| |||| | | ||| Sbjct 54132961 GCTCATCTCGCGCGACGAGGGGCTGCACTGCGACTTCGCCTGCCTCCTCTACGA-ACTCC 54132903 Query 65250 GC----GTAA--TAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGA 65303 | | || | || | | ||| ||| || ||||| || || ||||| Sbjct 54132902 TCAACGGCAAGCTCGA-GGAGTCCCG----CGTCCGCGAGATCGTCGCCGACGCCGTTGA 54132848 Query 65304 GATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGA 65363 || |||| | |||||||| ||||| || |||||| ||| |||| |||||| | | Sbjct 54132847 CATCGAGAGGGAGTTCATCTGCGACGCTCTGCCATGTGCCCTCGTCGGCATGAACGCCGG 54132788 Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGT-TGGGGTGC 65422 ||| | ||||||| |||| || | || || || ||| || | |||||||| Sbjct 54132787 ACTCATGGGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTC--ACGGCTCTGGGGTGC 54132730 Query 65423 CAC-CCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGG 65481 | || | ||||| || || || |||| ||||| ||| || | || Sbjct 54132729 AGCAAGATGTACAACGCCGTCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGC 54132670 Query 65482 AAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 |||||||||||||| |||||||| || || ||||| Sbjct 54132669 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 54132635 Score = 122 bits (134), Expect = 1e-22 Identities = 304/452 (67%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||| ||||||||||| | || || || || || ||||| || |||||||| || || || Sbjct 42406033 CTTTGCCGAGCGCCTGGTCGCCTTCGCCTGCGTCGAGGGGATATTCTTCTCGGGCTCCTT 42406092 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| |||||| ||||| || || Sbjct 42406093 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTAACTTTCTCCAACGA 42406152 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTC-AAGACTT 65248 ||||| ||||| || || || || ||| || |||||| || ||| || | ||| | Sbjct 42406153 GCTTATCTCCCGCGACGAAGGCCTGCACTGCGACTTTGCC-TG--CCTCCTCTACGACAT 42406209 Query 65249 --TGCGTA-ATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGA 65305 | || | || || | | | ||| | ||||| || || ||||| | Sbjct 42406210 CCTCCGGAGCAAGCTGGACGAGTCACGC-GTCCGTGAGATCGTCGGCGACGCCGTTGACA 42406268 Query 65306 TTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGA 65365 | |||| | ||| ||| ||||| ||||| || |||| | || |||||| || Sbjct 42406269 TCGAGAGGGAGTTTGTCTGCGACGCGCTCCCTTGCGCTCTCGTGGGCATGAACGGCGACC 42406328 Query 65366 AGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCA- 65424 ||| | ||||||| |||| || |||| || || ||| | | |||| ||| | Sbjct 42406329 TTATGAGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTC-ATGGCGCTGGGCTGCAAG 42406387 Query 65425 CCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAG 65484 || | ||||| | || ||||| |||| ||||| || ||| | || ||| Sbjct 42406388 AAGATGTACAACGCCACAAACCCATTCGACTGGATGGAGCTGATCTCCCTGCAGGGAAAG 42406447 Query 65485 ACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||| ||||| |||||||| ||||| ||||| Sbjct 42406448 ACCAATTTCTTCGAGAAGCGTGTTGGAGACTA 42406479 Score = 114 bits (126), Expect = 2e-20 Identities = 255/379 (67%), Gaps = 4/379 (1%) Strand=Plus/Plus Query 175213 GCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGA 175272 ||||| ||| || | ||| | |||||||| |||||| | || || | ||| | Sbjct 25424408 GCCAAGCTTGAGCTACAGGAGGTCGTGGATTTCCTCAAGAACCCTGACAAATACACCGCG 25424467 Query 175273 AGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACC 175332 ||| |||||||||||| ||| ||| || | || ||| |||||||| ||||| Sbjct 25424468 CTTGGGGCCAAGATCCCCAAGGGCTGCCTGCTTGTCGGCCCGCCGGGTACGGGGAAGACG 25424527 Query 175333 CTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCA 175392 || |||||||| ||| |||| || ||| | || || ||| || ||| | || | Sbjct 25424528 CTGCTCGCCCGTGCCGTCGCCGGGGAAGCCGGCGTGCCGTTCTTCTCCTGCGCGGCGTCC 25424587 Query 175393 AACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATC 175452 | || || ||| |||| || || ||||| || ||||| | || || || || | Sbjct 25424588 GAGTTCGTCGAGCTGTTCGTGGGCGTGGGCGCGTCCAGGGTGAGGGACCTGTTCGAGAAG 25424647 Query 175453 GCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAA 175512 ||| | || || || || |||||||| |||||||| || || || || | ||| Sbjct 25424648 GCCAAGGCCAAGGCGCCGTGCATCGTCTTCATCGATGAGATCGACGCCGTCGGGAGGCAG 25424707 Query 175513 CGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTAC 175570 || | || || ||| || | ||||| ||||| || || || ||||| || || | Sbjct 25424708 CGTGGTGCCGGAATGG-GTG-GGGGGAATGATGAGAGGGAGCAGACCATTAACCAGCTGC 25424765 Query 175571 TCACCGAGATGGATGGCTT 175589 |||| |||||||||||||| Sbjct 25424766 TCACGGAGATGGATGGCTT 25424784 Score = 114 bits (126), Expect = 2e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| ||||| || ||||| ||| |||| || || |||| | || |||| || Sbjct 47003765 GGGACTTTGATTATGACTACTTCGGTTTCAAGACTCTGGAGAGGTCTTACCTCTTGAA-- 47003822 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 ||| | ||| || || | |||| |||||| ||||||| ||| | || || | || || Sbjct 47003823 GCTTGGTGGGATTGTCGTTGAAAGACCACAGCACATGTTAATGAGAGTATCAGTAGGGAT 47003882 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| |||||||| |||| | | |||||| | ||||||||| || ||| Sbjct 47003883 ACACAAGGATGACATTGACTCTGCCATCAGAACATACCATCTGATGTCCCAGCGTTGGTT 47003942 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 || ||| || | |||||||| ||||||||||| || ||||| || ||| Sbjct 47003943 CACTCATGCTTCGCCAACCCTTTTCAATGCTGGCACCCCAAGGCCCCAG 47003991 Score = 111 bits (122), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||||||||| |||||| ||||||| ||||| || | | ||| Sbjct 27734522 TTTGTGGAGATGTTTGTTGGTGTTGGTGCCTCCCGGGTTCGTGATCTTTTCAAGAAGGCC 27734463 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 27734462 AAGGAGAATGCTCCCTGCATAGTATTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGA 27734403 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | ||||| || || || |||||| | ||||| ||| | || Sbjct 27734402 GGAACAGGTATTGGTGGTGGGAATGATGAAAGGGAGCAAACACTCAATCAGCTATTGACT 27734343 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | | ||||| || | ||| |||| ||||| || | | Sbjct 27734342 GAGATGGATGGGTTTGAGGGTAACACTGGAATAATTGTTGTTGCTGCCACCAACAGGGCT 27734283 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 || ||| | || || | ||| | || || |||||||| Sbjct 27734282 GACATCTTGGACTCTGCTTTACTTAGACCTGGACGTTTTGA 27734242 Score = 105 bits (116), Expect = 8e-18 Identities = 225/334 (67%), Gaps = 14/334 (4%) Strand=Plus/Plus Query 177585 CTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGC 177644 |||| | || ||||| ||||| ||| ||| || || || || |||||||||||||| || Sbjct 50105277 CTCCTCAGTGGCGACGACATAGTCACCAGGCTTGTCCTGCTGCAGCATGAGCCACATTGC 50105336 Query 177645 TTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAG 177704 || || || ||| ||| ||||||||| ||||| ||| |||||| ||||| | Sbjct 50105337 CTCGACGTAATCCCCGGCGAAACCCCAGTCCCTGGCGGCGGAGAGGTTGCCGAG---GAA 50105393 Query 177705 GAACT--CTCT-----CTCACCTTTCACAATTTGTTTGACGCCATCAGTAATCTTCTTTG 177757 || || ||| | ||||| || | |||| || || ||||| | Sbjct 50105394 GACCTTGGTCTGGAGGCCGACCTT----GATGCGGCCGACGGCACGGGTGATCTTGCGGG 50105449 Query 177758 TGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCAT 177817 |||| |||| | || || | || || |||||||||||||| | ||| |||||| Sbjct 50105450 TGACGAAGTTCTCGCCGCGGCGGGGGGACTCGTGGTTGAAGAGCACGCCGTTGCAGGCGA 50105509 Query 177818 ACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGC 177877 | || || |||| || ||||| || | | |||||| ||||| | |||| | || Sbjct 50105510 AGATGCCGTAGGCCTCGCGGTAGTTGACGGTGTACCAGTGCGCGGCGACCTTGGCGGCGG 50105569 Query 177878 CATAGACGGATCGTGGGTAGAAGGGTGTCTCCTC 177911 | ||| ||| || |||| |||||| || ||||| Sbjct 50105570 CGTAGGGGGAGCGCGGGTGGAAGGGCGTGTCCTC 50105603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569391200640