Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 3e-12 >seq3 Length=59935730 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||| | || || || || || | |||| ||| || ||||| Sbjct 53307147 ATTTGCATTCCACCTCGGAGGCGGAGGACGAGGTGAAGAGTAGACTCCTTCTGGATATTG 53307206 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || || | ||| || | || ||||||||||| || | ||||| || Sbjct 53307207 TAATCAGCCAATGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGG 53307266 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || || || ||||| || || || | || | ||| ||| || || || Sbjct 53307267 TCAGGTGGGATGCCCTCCTTATCCTGAATCTTTGCCTTCACATTGTCAATGGTGTCAGAG 53307326 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || |||||||| || || ||||| || || || ||||| |||||||| Sbjct 53307327 CTCTCGACCTCCAGAGTTATGGTCTTCCCTGTAAGTGTCTTAACAAAGATTTGCAT 53307382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899654085120960