Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 8e-13 >seq3 Length=59935730 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || |||||||||||||| || || || | || || || || Sbjct 53307155 AATGCAAATCTTTGTCAAGACATTGACTGGAAAGACCATCACGCTTGAGGTGGAGAGCTC 53307096 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| |||||||| || || || || || || || || ||||| || || Sbjct 53307095 TGACACCATTGATAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGATCA 53307036 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | |||||| |||||||| || ||| | || ||| ||||||| | Sbjct 53307035 GCAGAGGCTCATCTTTGCCGGAAAGCAGCTGGAGGATGGGCGTACCTTAGCAGATTACA- 53306977 Query 156002 TATATCCAAA--GAGGCGACGCTTCAT 156026 | ||||||| ||| | || |||||| Sbjct 53306976 -ACATCCAAAAGGAGTCCACTCTTCAT 53306951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871743844800