Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 4e-11 >seq1 Length=75119905 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| |||||||| |||| | ||| ||||| ||||| ||||| || || || || || Sbjct 27893900 TGTTTGCCAGCAAAGATTAGGCGCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATC 27893959 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || |||||| || || || ||||| || || || ||||||||||| || || Sbjct 27893960 TTCGCCTTCACATTATCGATTGTGTCAGACGACTCGACCTCCAGAGTAATGGTCTTGCCT 27894019 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || || || || | || || ||||| Sbjct 27894020 GTCAAGGTCTTGACAAAGATTTGCAT 27894045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135683202400