Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 156 1e-32 seq1 122 3e-22 >seq3 Length=59935730 Score = 156 bits (172), Expect = 1e-32 Identities = 240/340 (71%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| |||||||||||| ||| | | || || Sbjct 14832638 ATTTCTTACAGTGCCATCATATTTCACCATGATGTCTTCCATAGCCTTCACAAGCCGTCG 14832579 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||||||| || || ||| ||||| ||||| |||||||| || || | | |||||| Sbjct 14832578 CTGAATATATCCGGTCTCAGAAGTTTTCACAGCAGTATCAATCAGCCCTTCTCTACCACC 14832519 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGA 302716 ||||||||||||||| | |||| ||| ||| || || | | | ||| |||| || | Sbjct 14832518 CATAGCATGGAAGAAAAATTCTTGCGG-CGTCAGACCTCGGAGGTAAGAGTTCTCCACAA 14832460 Query 302717 AACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT 302776 | ||||| ||||| || ||| || || ||||| |||| |||| | || Sbjct 14832459 ACCCACGACTTTCGGGACCATAGTCATTTTTTGTGAAGTGGGGCAATGTCCGATCAACAA 14832400 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || | || || ||||| || ||||| ||||||||||| | || | | |||| || | Sbjct 14832399 AACCAAACGGTATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATTTGGG 14832340 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||||| | |||||| || ||||| ||| | ||||| Sbjct 14832339 AAATATTAATGAAACTGCCTTTTGAGCCTGCAGTGACCAT 14832300 >seq1 Length=75119905 Score = 122 bits (134), Expect = 3e-22 Identities = 342/512 (67%), Gaps = 20/512 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | |||| | | ||| || | ||| || || || || ||||| || || Sbjct 27734239 CTGTCAAAACGTCCAGGTCTAAGTAAAGCAGAGTCCAAGATGTCAGCCCTGTTGGTGGCA 27734298 Query 288910 GCCAATACAACAATAGATTCGGTTTG---CTTAAATCCATCCATACTTGTTAAAATTTGA 288966 || | ||||||| | | || | || ||| |||||||| || || | ||| Sbjct 27734299 GCAA---CAACAATTATTCCAGTGTTACCCTCAAACCCATCCATCTCAGTCAATAGCTGA 27734355 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 || |||||||| |||||||||||||| ||| | ||| ||| | | || |||| Sbjct 27734356 TTGAGTGTTTGCTCCCTTTCATCATTCCCACCAC--CAAT-ACCTG--TTCCT-CTTTGC 27734409 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC--AA 289084 | ||||||||||||||||| |||| || | | || |||| ||| | | || Sbjct 27734410 CTTCCAACAGCATCAATTTCATCAACAAATACTATGCAGGGAGCATTCTCCTTGGCCTTC 27734469 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||| ||| | || | || ||||| || |||| ||||||| |||| || ||||| |||| Sbjct 27734470 TTGAAAAGA--TCACGAACCCGGGAGGCACCAACACCAACAAACATCTCCACAAACTCAG 27734527 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | |||| | || |||| || ||||| ||||| | |||| | || || | | Sbjct 27734528 ATCCCGATATTGAAAAAAATGGCACTCCGGCTTCTCCTGCAATTGCCTTGGCAAGCAAAG 27734587 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 ||||||| |||||||| || || | ||| || ||||| || | || || ||| Sbjct 27734588 TCTTACCAGTTCCAGGAGGACCAATAAGTAGCACGCCCTTAGGAATGCGAGCACCGACAG 27734647 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATATTTTGCC 289323 | | |||| || |||| || || || || | |||| | ||| || | ||||| Sbjct 27734648 CGGTGAACCTCTCTGGTTTCTTCAAGAACTCGACCACTTCCATGAAG-TCTTGCTTTGCT 27734706 Query 289324 TCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354 ||||| ||| || || |||||| |||| |||| Sbjct 27734707 TCATCGACA-CCAGCAACATCATCAAATGTAA 27734737 Score = 120 bits (132), Expect = 9e-22 Identities = 213/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| ||||| |||||| ||| | | || | |||||||| ||||||| ||| ||||| Sbjct 282980 CATGATGTCCTCCATAGCCTTCACGAGCCGCCTCTGAATATGACCAGTTTCAGAAGTTTT 282921 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| ||||| | | |||||||||||| |||||||| | || | ||| Sbjct 282920 CACGGCAGTATCAATCAGACCTTCTCTACCACCCATAGCGTGGAAGAAAAATTCCTGCGG 282861 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || || | | | ||| |||| || || ||| | ||| || || ||| Sbjct 282860 TGTCAGACCTCGATGGTAAGAGTTCTCCACAAATCCATGACTCTCAGGACCATAGTCATC 282801 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 || || ||||| |||| || | || | || ||||||| ||||| || ||||| Sbjct 282800 TTTTGTGAAGTGGGGCAATGTACAACCAACAAAACCAAATGGGATCCGCTTGCCCTCAAC 282741 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || || ||||| | || | | |||| || |||||||| | |||| | || ||||| Sbjct 282740 ATTATGTTGTCCGACCCAAGCAGTCATTTGTGAAATATTAATGAAACTGACTTTCGAGCC 282681 Query 302865 AGCATTTACCA 302875 ||| | |||| Sbjct 282680 TGCAGTGACCA 282670 Score = 116 bits (128), Expect = 1e-20 Identities = 161/225 (72%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 156044 AAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 ||| ||||| || |||||||| ||| ||||||||||| |||||||| | |||||| || Sbjct 47004318 AAACCTACCCTTTCTCTTGCCTCCACCTTGATCTACATAACGAGCAGTATCATTGAAAAC 47004259 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 || || |||||||| ||| |||||||| || ||||| ||||| || |||| |||| Sbjct 47004258 ACGTAACATAGGAACAATCCCATTGGATGTTCCATTCGTTCCACGGATATAGCTCCCAGT 47004199 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCA 156220 | |||| || |||| | ||||| || || | |||| || ||| || Sbjct 47004198 AGCACGAATGTTGTGAACTGAGACACCAATTCCTCCAGCAGATTTGCTGATGACAGCACA 47004139 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 |||||| | ||||| | ||||| ||||| |||||||| ||| Sbjct 47004138 TTCCTTCAGAGTATCATAGATACCCTCAATGCTATCATCTTTCAT 47004094 Score = 105 bits (116), Expect = 2e-17 Identities = 207/301 (69%), Gaps = 10/301 (3%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || || |||||||| | ||| ||||| || |||||||||||| ||| ||| Sbjct 10561979 GCAATGAGTCCACACTTTTCACATACATGTACTCTGTAAGCATCACTCTGGTCGAATAAT 10562038 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | |||| ||| | ||||| || | |||||| ||||| ||||||||||| || Sbjct 10562039 CTTTCCTTCAAGAAAAATGCAGCACCATGAGCAATCATGCAATCCCGCTCCATTTCTCCA 10562098 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 ||||||||||||||||| || | | ||||| || ||||| | || || | | | Sbjct 10562099 AAACGAAGACCACCATCACGTGAGCGCCCCTCTGCTGGCTGCCTGGTCAGTATCTGGACA 10562158 Query 251584 GGAC--CGA--TGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTA 251639 |||| ||| | || | || ||| |||| ||||| |||||||| |||||||| Sbjct 10562159 GGACCACGACCTCTAGAGTGAATTTTG----TCATCCACCATGTGCTTGAGCCGCTGGTA 10562214 Query 251640 GAATGCGGGACCGATGAAGATGCTCGAAGGC-ATTTGCTCTCCAGTTAGAGCGTTATACA 251698 | | |||||| | ||| || | | || | |||| || ||||| || |||| |||| Sbjct 10562215 ATAAGTGGGACCTAGGAAAATCATAGCAGTCAATTTTCT-ACCAGTGTGACCGTTGTACA 10562273 Query 251699 T 251699 | Sbjct 10562274 T 10562274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817071985436