Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 235 7e-56 seq2 123 3e-22 seq3 114 2e-19 >seq1 Length=75119905 Score = 235 bits (260), Expect = 7e-56 Identities = 227/291 (78%), Gaps = 3/291 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||||||||||||||||||||||||||||||||| ||||| | |||| ||||| | Sbjct 54133218 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCCACCT 54133277 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || |||||||||| ||| ||||||||| ||||||||||||| |||||||| Sbjct 54133278 GCACGTCGGACATGAACCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGA 54133337 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGAC---ACCCAGT 869807 | || || || ||||| ||| ||||||||||||||| | ||||| | |||||| Sbjct 54133338 AGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGGAGAGCGTCTCGTCCCAGT 54133397 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 || | ||| | | |||||||||||||||||| ||||||| || ||| | ||||| | Sbjct 54133398 GGCGCGCGTCCGAGGAGAGGTCCACCTCCTCGGCCGTCCAGAAGGACGCCACCGCCTTCT 54133457 Query 869868 TGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT 869918 |||| | |||||| | ||| |||| ||||| ||||| | | ||||||| Sbjct 54133458 TGTAGAACTCCCAGATCTGCGGGTACCGGATCGGGAACATGGAGAAGCGGT 54133508 Score = 217 bits (240), Expect = 2e-50 Identities = 247/325 (76%), Gaps = 16/325 (5%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| |||||| |||||| |||||||||||||||| |||||||| Sbjct 54132626 GCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATG 54132685 Query 868751 AACTCCATCCACGGGAACGGGTTG--GGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACG 868808 | ||||||||| |||||||||| |||| ||||| ||| ||| || || | || Sbjct 54132686 AGCTCCATCCAGTCGAACGGGTTGACGGCG--TTGTACATCTTGCTGCACCCCAGAGCCG 54132743 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 |||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| Sbjct 54132744 TGAGCAGGCGGTCGGCGACGAACTCGATGTACTGGCCCATGAGTCCGGCGTTCATGCCGA 54132803 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 ||| || ||||| | |||| | ||||| ||||||| || ||||| ||| ||| Sbjct 54132804 CGAGGGCACATGGCAGAGCGTCGCAGATGAACTCCCTCTCGATGTCAACGGCGTCGGCGA 54132863 Query 868929 TGATCTGCCTGGGCACGTCGG---CCGAGGGCTT---GTTGACGAGCATCGTGTAGAGCA 868982 ||||| | | ||| || || | |||| ||||| ||| || |||||| | Sbjct 54132864 CGATCT---CGCGGACGCGGGACTCCTCGAGCTTGCCGTTGAGGAG-TTC--GTAGAGGA 54132917 Query 868983 GGCAGGCAAAGTCGCAGTGCAACCC 869007 ||||||| ||||||||||||| ||| Sbjct 54132918 GGCAGGCGAAGTCGCAGTGCAGCCC 54132942 Score = 205 bits (226), Expect = 1e-46 Identities = 219/289 (76%), Gaps = 3/289 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| ||||| | |||| || || ||| Sbjct 42405894 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGG 42405835 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| || ||||||||| |||||||||||| ||||||||| Sbjct 42405834 ACGTCGGACATGAACCGGGACGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 42405775 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGG 869809 || || || ||||| || |||||||||||||||| | ||| | |||||||| Sbjct 42405774 AAGGCGAGCACGTGGGAGACGAAGTGGCGCTCGTCGTTGGACAGCGTGGTGTCCCAGTGG 42405715 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | ||||| | ||||||||||||||| || ||||||| || ||| | ||||| ||| Sbjct 42405714 CGCGCGTCGGAGGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGACGCCACCGCCTTCTTG 42405655 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT 869918 || | |||||| | || || | ||||| ||||| | | ||||||| Sbjct 42405654 TAGAACTCCCAGATCTGAGGGAACCGGATGGGGAACATGGAGAAGCGGT 42405606 Score = 192 bits (212), Expect = 7e-43 Identities = 242/330 (73%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 868678 GGACGAGACGTGCGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCC 868737 |||| |||| ||||| ||| || || || ||| |||||| || |||||||| || Sbjct 42406501 GGACATGACGGAGGCCTTCTGGTAGTCTCCAACACGCTTCTCGAAGAAATTGGTCTTTCC 42406442 Query 868738 CTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCA 868797 || || ||||||| ||||||||| ||| ||||| | | ||||| ||| | ||| Sbjct 42406441 CTGCAGGGAGATCAGCTCCATCCAGTCGAATGGGTTTGTGGCGTTGTACATCTTCTTGCA 42406382 Query 868798 TCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGC 868857 || |||| | |||||||||||| ||||| |||||||||||||||| ||| ||| || | Sbjct 42406381 GCCCAGCGCCATGAGCAGGCGGTCCGCGACGAACTCGATGTACTGGCTCATAAGGTCGCC 42406322 Query 868858 GTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGAC 868917 ||||||||| | ||| || || |||| |||| |||||||| ||||||| || || Sbjct 42406321 GTTCATGCCCACGAGAGCGCAAGGGAGCGCGTCGCAGACAAACTCCCTCTCGATGTCAAC 42406262 Query 868918 GGCCTCGACGATGATCTGCCTGGGCACG----TCGGCCGAGGGCTTGTTGACGAGCATCG 868973 ||| ||| ||| ||||| | || | || ||| || ||||| | ||| || Sbjct 42406261 GGCGTCGCCGACGATCT-CACGGACGCGTGACTCGTCC---AGCTTGCTCCGGAGGATGT 42406206 Query 868974 TGTAGAGCAGGCAGGCAAAGTCGCAGTGCA 869003 |||||| |||||||||||||||||||||| Sbjct 42406205 CGTAGAGGAGGCAGGCAAAGTCGCAGTGCA 42406176 Score = 181 bits (200), Expect = 1e-39 Identities = 212/285 (74%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||| |||| ||| || |||||||| || |||||| Sbjct 54132941 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACCACGCTTC 54133000 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| |||||||||||||| ||||||||| ||||||||||||||| ||| ||| Sbjct 54133001 TTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAG 54133060 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||| ||| |||||||| ||| ||| || ||| | |||||| ||| | |||| Sbjct 54133061 GCGACGAGGCGCTCGGCGAAGCGCTCG----CCGCCT--TCGATCCAGCGCATGGACCAG 54133114 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 ||||||| | || | || || ||||||| |||||| |||||| ||||||| ||| Sbjct 54133115 ACGGCCTTGCGGCGGACGGCGGGGACGGTGTCGACGGCGCGGAAGAGGCGGTCCTTCTCG 54133174 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 || | ||| || ||||| |||| ||| || || || ||||| Sbjct 54133175 GCGGCGTCGCGGATGTAGGTCTCGAGCAGCAGGGAGTACATCTCC 54133219 Score = 167 bits (184), Expect = 3e-35 Identities = 207/284 (73%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| ||| | |||||| || | ||||| |||||||||||||||||| Sbjct 42406173 CCTTCGTCGCGGGAGATAAGCTCGTTGGAGAAAGTTAGGCCCGGCATGAGGCCGCGCTTC 42406114 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| |||||||||||||| ||||||||| || || ||||||||| ||| ||| Sbjct 42406113 TTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAATATCCCCTCGACGCAGGCGAAG 42406054 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||| || |||||||||||| ||| ||| || |||||| ||| ||||| Sbjct 42406053 GCGACCAGGCGCTCGGCAAAGCGCTCGCCGCC------GTCGATCCAGCGCATGGCCCAT 42406000 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 |||||||| | ||| | || | ||||||| |||||| || || ||||||| ||| Sbjct 42405999 TCGGCCTTGCGGCGCACGGCGGGGATGGTGTCGACGGCGCGGAAAAGACGGTCCTTCTCG 42405940 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| || ||||| ||||| || || || || |||| Sbjct 42405939 ACGTCCTCCCGGATGTAGGTCTCGATAAGCAGGGAGTACATCTC 42405896 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || ||||| | | || ||||| |||| ||||||||||||||| | || Sbjct 46858629 GCTTGGCGAGCTCGCCTGGGAGGACGAGGCGGACGGAGGTCTGGATCTCGCGGGACGTGA 46858570 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || || | ||| ||| | ||| |||| | Sbjct 46858569 TGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGACTCCCCGGCGAGTTTCTCGAAGA 46858510 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | |||| ||||||||| | ||| |||| Sbjct 46858509 TGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCCGGGT 46858450 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||||||||||||| ||||| Sbjct 46858449 GCACCTGCTTGAGCACCTTGAAGATG 46858424 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || || || |||| |||||||||||| || | | || Sbjct 65475638 GCTTGGCGAGCTCGCCGGGGAGGACGAGACGAACGGAGGTCTGGATCTCCCGGGAGGTGA 65475697 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| | ||||||| | | |||||| | | | || | | Sbjct 65475698 TGGTGGGCTTCTTGTTGTACCGCGCCAGCTTGGCCGCCTCGCCGGCAAGCTTTTCAAAAA 65475757 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| |||||| | |||| ||||||||| | ||| |||| Sbjct 65475758 TGTCGTTGATGAAGGAGTTCATGATCGACATGGCCTTGGAGGAGATGCCGATGTCCGGGT 65475817 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||| |||||| ||||| Sbjct 65475818 GCACCTGCTTGAGGACCTTGAAGATG 65475843 Score = 105 bits (116), Expect = 8e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | || || || |||| |||||||||||| || | | || Sbjct 6219031 GCTTGGCGAGCTCACCGGGGAGGACGAGACGGACGGAGGTCTGGATCTCCCGGGAGGTGA 6218972 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || || | ||| ||| | | | || | | Sbjct 6218971 TGGTGGGCTTCTTGTTGTAGCGGGCAAGCTTGGCGGACTCACCGGCCAACTTCTCAAAGA 6218912 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | |||| ||||||||| | ||| |||| Sbjct 6218911 TGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCCGGGT 6218852 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||||||||||||| ||||| Sbjct 6218851 GCACCTGCTTGAGCACCTTGAAGATG 6218826 Score = 102 bits (112), Expect = 1e-15 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || ||||| || | ||||||||||| | | | || Sbjct 55016178 GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGAACCGAAGTCTGGATCTCCCTGGAGGTGA 55016237 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || || | | | ||| ||| |||| | Sbjct 55016238 TGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCCGACTCCCCAGCGAGTTTCTCGAAGA 55016297 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||||| | |||| ||||||||| | |||||||| Sbjct 55016298 TGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGT 55016357 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||||||||||||| ||||| Sbjct 55016358 GGACCTGCTTGAGCACCTTGAAGATG 55016383 Score = 95.1 bits (104), Expect = 1e-13 Identities = 99/128 (77%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 1572461 TCGATGAGCAACTGGGCGATGCG--CGCCTCGCCCTGGACAACGTGGTCGGCGTCGGTGT 1572518 ||||||| || ||| |||||||| |||| || | |||||| ||| | || | || Sbjct 9703562 TCGATGATCATCTGCGCGATGCGGTCGCCAGGC--TTCACAACGAAGTCCACCTCCGAGT 9703619 Query 1572519 GGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGATGACGCCTGCGCCGA 1572578 ||||||||||||||||||||||| ||| || || || || ||||| || || ||||| | Sbjct 9703620 GGTTGAAGAGCACGACGCCCACCGGGCCACGGTAATCCGCGTCGATCACTCCAGCGCCCA 9703679 Query 1572579 CGTCGATG 1572586 |||||||| Sbjct 9703680 CGTCGATG 9703687 >seq2 Length=59384932 Score = 123 bits (136), Expect = 3e-22 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || |||||||||| ||||||||||||||| | | || Sbjct 20758207 GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACGGAGGTCTGGATCTCGCGGGAGGTGA 20758266 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGC-CGATGCGGTCGATC 1254461 | ||| |||||| | || || ||||||| ||| ||| |||| Sbjct 20758267 TGGTGGGCTTCTTGTTGTACCTGGCGAGCTTTGCGGCCTCC-TGCGCGAGCTTCTCGAAG 20758325 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||||| || |||||||||| ||||| | |||| ||||||||| | ||| ||| Sbjct 20758326 ATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCCGGG 20758385 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||||||||||| ||||| Sbjct 20758386 TGCACCTGCTTGAGCACCTTGAAGATG 20758412 Score = 114 bits (126), Expect = 2e-19 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || |||||||| |||||||||||||| || | | || Sbjct 53451763 GCTTGGCAAGCTCGCCGGGGAGGACGAGGCGCACCGCGGTCTGGATCTCCCGGGAGGTGA 53451822 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| | |||| || | | | |||| | ||| || | | Sbjct 53451823 TGGTGGGCTTCTTGTTGTACCGCGCGAGCTTGGCCGACTCGCCGGCGAGCTTCTCAAATA 53451882 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||||| || |||||||||| ||||| | |||| |||||| || | ||| |||| Sbjct 53451883 TATCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATACCAATGTCCGGGT 53451942 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||||||||||||| ||||| Sbjct 53451943 GCACCTGCTTGAGCACCTTGAAGATG 53451968 Score = 104 bits (114), Expect = 3e-16 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||||| || |||||||||| |||||| | |||| ||||||||| | ||| ||| Sbjct 26569228 ATGTCGTTGATGAAGGAGTTCATGATCGACATGGCCTTGGAGGAGATGCCGATGTCAGGG 26569169 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||||||||||| ||||| Sbjct 26569168 TGCACCTGCTTGAGCACCTTGAAGATG 26569142 Score = 100 bits (110), Expect = 3e-15 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1254456 TCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACG 1254515 |||| |||||||||| || |||||||||| ||||| | |||| ||||||||| | | Sbjct 219124 TCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATG 219183 Query 1254516 TCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||| |||||||||||||||||| ||||| Sbjct 219184 TCGGGGTGGACCTGCTTGAGCACCTTGAAGATG 219216 Score = 100 bits (110), Expect = 3e-15 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1254456 TCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACG 1254515 |||| |||||||||| || |||||||||| ||||| | |||| ||||||||| | | Sbjct 245210 TCGAAAATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATG 245151 Query 1254516 TCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||| |||||||||||||||||| ||||| Sbjct 245150 TCGGGGTGGACCTGCTTGAGCACCTTGAAGATG 245118 Score = 96.9 bits (106), Expect = 4e-14 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||||| || |||||||||| |||||| | |||| ||||||||| | ||||||| Sbjct 26595923 ATGTCGTTGATGAAGGAGTTCATGATCGACATGGCCTTGGAGGAGATGCCGATGTCGGGG 26595982 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGAT 1254547 || ||||||||||| |||||| |||| Sbjct 26595983 TGGACCTGCTTGAGGACCTTGAAGAT 26596008 Score = 95.1 bits (104), Expect = 1e-13 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 1469933 TGTAGACAAAGACGCGGCCGTCGAGGGCGACCGCGATGGCGTCGCGCACCATCTCGACAC 1469992 ||||||| |||| || || ||| |||| ||||| |||||| | ||| | Sbjct 57469670 TGTAGACGAAGATCTTGCTCTCCAGGACGACGACGATGCGGTCGCGGCGGAGGCGGACGC 57469729 Query 1469993 CGCGCACCGGCGAGTTGAAGCACAGTTCGGCGATGCTCTGGCCGCGGTGGTCGTCCCATA 1470052 ||||||| || || |||||| | || || |||||| ||| ||||||||||||| | Sbjct 57469730 CGCGCACGGGGGACTTGAAGGAGAGCTCCCCGATGCAGCGGCTCTGGTGGTCGTCCCAGA 57469789 Query 1470053 TCATGACGC-GATCGTCGCGAAAGCACGGGCTGGCGCCGCCGCCCACCAGCGCGACGATG 1470111 |||| || | | | || | | | |||| | || ||||| || ||||||| |||| Sbjct 57469790 TCATCACCTTGTTGGGCGGGTA-GTGCGGGGCGTTCCCACCGCCGACGAGCGCGAGGATG 57469848 Query 1470112 TTGGACCGGAAGAGCATGGTGGCGAGGCCCACGCCGCCGCCCAGGTCGC 1470160 ||| ||||||||||||| | ||| ||| | ||| |||||| || ||| Sbjct 57469849 TTGCACCGGAAGAGCATCTCGACGACGCCGATGCCCCCGCCCTGGCCGC 57469897 >seq3 Length=59935730 Score = 114 bits (126), Expect = 2e-19 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 1592153 GTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCT 1592212 ||||| ||| || |||||| || | ||||| || ||||||||||||||||||||| Sbjct 45505275 GTCGACCAGGCCGTCCTCTTCGACCTCATCCTGGCTGCCAACTACCTCGACATCAAGGGG 45505334 Query 1592213 CTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAG 1592272 ||||| || || ||| || | || ||| ||||||||||||||||| | ||||||| Sbjct 45505335 CTGCTGGACCTCACCTGCCAGACCGTTGCCGACATGATCAAGGGCAAGACCGTCGAGGAG 45505394 Query 1592273 ATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||| | || ||||||||| ||| Sbjct 45505395 ATCCGCACCAAGTTCAACATCAAGAACG 45505422 Score = 109 bits (120), Expect = 7e-18 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || ||||| |||| |||||||||||| | | | || Sbjct 55040302 GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCCCTGGAGGTGA 55040243 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGAC-GGCCGGCCTCGGTGCC-GATGCGGTCGAT 1254460 | ||| |||||| | ||| || ||||| | | ||| | | | |||| Sbjct 55040242 TGGTGGGCTTCTTGTTGTACCTCGCGAGCTTGGCCGACTCCCCGGCCAGCTTC--TCGAA 55040185 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||||||| || |||||||||| ||||| | |||| ||||||||| | ||| || Sbjct 55040184 GATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCCGG 55040125 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||||||||||||||| ||||| Sbjct 55040124 GTGCACCTGCTTGAGCACCTTGAAGATG 55040097 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| ||| |||||||| |||| || || ||| || |||| || || Sbjct 113035 GCTGCAAACTATCTCAACATCAAGGGATTGCTGGACCTCACTTGCCAGACTGTTGCTGAC 112976 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||||||| | || |||||||||||||||||||| ||||||||| Sbjct 112975 ATGATCAAGGGCAAGACTCCTGAGGAGATCCGCAAGACCTTCAACATCAAG 112925 Score = 86.0 bits (94), Expect = 8e-11 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCA-AGTCT 1592236 || || | || ||||||||||| ||||||||| ||||| || || | | ||| || Sbjct 41305647 TGTTCATGGCGGCCAACTACCTGGACATCAAGGGGCTGCTGGACCT-GTGCGCACAGAAG 41305589 Query 1592237 GTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||| ||||||||||||||||| ||| |||||| ||||| ||| ||| |||||| Sbjct 41305588 GTGGCCGACATGATCAAGGGCAAGAAGCCGGAGGAGGTCCGCGAGATCTTCGGGATCAAG 41305529 Query 1592297 TACG 1592300 ||| Sbjct 41305528 AACG 41305525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136902188876