Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 3e-11 >seq1 Length=75119905 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 194197 GATGGTTGTAGAATAGTTAAAGTTGTTATTGG-TCAGTTACGTATACCTGAAATAGGGGA 194255 ||||||| ||| | || || ||| || | || ||| || ||||| |||| || || Sbjct 10562766 GATGGTTTAAGATTTGTCAAGGTTAGAATGCGATCTGTT-CGCATACCACAAATTGGAGA 10562708 Query 194256 TAAATTTTGTTCG-GGAATGGCTCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAG 194314 ||| || | || |||| ||| ||||||||| ||| |||| ||| ||||||| | Sbjct 10562707 TAAGTTCAGCAGTAGGCATGG-TCAGAAAGGAACTGTTGGAATGACTTACACACAAGAGG 10562649 Query 194315 ATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATCAATCCAAATTGTATTC 194374 | ||||||| |||| ||| || || ||||| ||| | |||||| || ||||| Sbjct 10562648 ACATGCCATGGACAATCGAAGGCATCACGCCTGATATCATTGTGAATCCACATGCTATTC 10562589 Query 194375 CGTCCAGAATGACCATTAATCAAATTATTGCTACTGTTATGGGTAAA 194421 ||||| | ||||| ||| |||| | || | | ||||||||||| Sbjct 10562588 CGTCCCGTATGACTATTGGTCAACTGATCGAGTGTATTATGGGTAAA 10562542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632489378628640