Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 seq1 91.5 1e-13 >seq3 Length=59935730 Score = 96.9 bits (106), Expect = 3e-15 Identities = 208/305 (68%), Gaps = 7/305 (2%) Strand=Plus/Plus Query 34311 GATGAG---CTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAA 34367 |||||| ||| ||||| |||||| |||| | |||| ||| |||| | |||||| Sbjct 2231609 GATGAGAACCTCTGTCTCAGGGTTGCCACAGGCTTTACACTGGACATACTTCCTGATGAA 2231668 Query 34368 ACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATG-AATCGTT 34426 ||||| || | | ||| || ||| || | ||||| || | | || | Sbjct 2231669 GTTCTCAAGAAGACCAGCGAGCTTCGTGGTGTCATGAGCACCGTTAACCAGGGAAACCCC 2231728 Query 34427 CGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486 ||| || | |||| | || ||||||||| |||||||| | |||||||||||||| || Sbjct 2231729 CGTCTTC-TCGTCGAATTTCGATTGCGCGCCGAGCTCGCATCTGAAGTACTTTGTCGTGT 2231787 Query 34487 AAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGA 34546 | || || | |||| || || || || || ||||||||||||| ||||||| Sbjct 2231788 AGGAAGCAGGCCTGGCAAGTGCTTTTGCTATGTCAACCATGTTGACGATGTTCGTCTTGA 2231847 Query 34547 TGCCGTTGCCCTTTCCTTCGACCTTGGCGCAG-ATGCGCGGCATTTTGTAGCGGTAGAAC 34605 |||| ||||| ||||| | |||| ||| || | ||||| ||||| | |||||| Sbjct 2231848 TGCCATTGCCGCGGCCTTCTATTTTGG-TCAGCATTCTGGGCATCTTGTACCTGTAGAAG 2231906 Query 34606 GCGTC 34610 || || Sbjct 2231907 GCATC 2231911 >seq1 Length=75119905 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || || || ||||| |||||||| | || ||| | Sbjct 27894045 ATGCAAATCTTTGTCAAGACCTTGACAGGCAAGACCATTACTCTGGAGGTCGAGTCGTCT 27893986 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || |||||| ||||| || || | || ||| || Sbjct 27893985 GACACAATCGATAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAG 27893926 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || |||||||| ||||||| | | || |||| ||||||||| Sbjct 27893925 CAGCGCCTAATCTTTGCTGGCAAACAGCTTGAGGATGGCCGCACCCTGGCAGATTACAAC 27893866 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || |||||||| || ||||| ||||| Sbjct 27893865 ATCCAGAAAGAATCCACTCTGCACCTGGTG 27893836 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 |||||||| ||| | ||| |||||| ||||| || |||| ||| || || || |||| Sbjct 26504288 GACAAAGAGGGCATTCCCCCGGATCAGCAAAGGCTAATTTTTGCTGGAAAGCAATTGGAA 26504347 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||| | || |||||||||||||| ||||| || ||| | || ||||| | Sbjct 26504348 GATGGGCGAACGTTAGCTGATTACAACATTCAGAAAGAGTCGACGCTCCATTTGGTGCTG 26504407 Query 110486 AGACTGCGAGGGGGAA 110501 || ||| | || |||| Sbjct 26504408 AGGCTGAGGGGTGGAA 26504423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841459117804