Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq3 93.3 3e-14 >seq1 Length=75119905 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| || |||| ||| || Sbjct 28415808 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCTTCT 28415867 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || |||||| || || || ||| | ||| ||| ||| Sbjct 28415868 GACACCATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 28415927 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || ||||| ||||| | | || |||| ||||||||| Sbjct 28415928 CAGAGGCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAC 28415987 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 || ||||||||||| || | ||| ||||| |||| Sbjct 28415988 ATCCAAAAGGAGTCCACCCTCCACCTGGTGCTGAG 28416022 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| || |||| ||| | Sbjct 28415580 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCCTCT 28415639 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 28415640 GACACAATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 28415699 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| |||| || | ||||| || ||||| ||||| | | || |||| ||||||||| Sbjct 28415700 CAGCGACTCATCTTCGCGGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCTGACTACAAC 28415759 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| || | ||| ||||| | || |||| || || Sbjct 28415760 ATCCAGAAGGAGTCCACACTCCACTTGGTGCTCAGGCTGCGTGGTGG 28415806 >seq3 Length=59935730 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || ||||| || ||||| ||||| ||| | || |||| | Sbjct 3235046 ATGCAAATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCATCT 3234987 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| ||||| || ||| | ||| || ||| Sbjct 3234986 GACACCATCGACAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 3234927 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || || || ||||| || || | || || | |||||||||||| Sbjct 3234926 CAGCGCCTTATCTTCGCAGGCAAGCAGCTTGAAGATGGCAGGACCCTTGCGGACTACAAC 3234867 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || |||||||| || ||||| |||| Sbjct 3234866 ATCCAGAAGGAGTCCACTCTGCACCTGGT 3234838 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || ||||| || ||||| ||||| ||| | || |||| | Sbjct 2681696 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCATCT 2681637 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 2681636 GACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 2681577 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || | || ||||||||| Sbjct 2681576 CAGCGCCTGATCTTTGCAGGAAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACAAC 2681517 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 2681516 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 2681487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876663883292