Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-26 seq1 127 2e-24 >seq3 Length=59935730 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || || ||||| ||||||||||||||||| || || Sbjct 13693037 CCACCTCGCAGACGAAGGACAAGGTGCAGGGTGGACTCTTTTTGAATGTTATAGTCTGCT 13692978 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||| | ||| || || || || |||||| | || | | ||||| || || || Sbjct 13692977 AAGGTGTGCCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGG 13692918 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| |||||||| ||| |||| |||||| | |||| ||||||||| ||| || Sbjct 13692917 ATGCCCTCCTTGTCTTG-AATCTTTGCCTTGACATTATCTATCGTGTCAGAAGATTCAAC 13692859 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || |||||||| | ||| || ||||| |||||||| Sbjct 13692858 CTCCAAAGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAAATCTGCAT 13692811 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||||||| || || | ||||| || || || || || ||||| ||||| || Sbjct 53307384 CCGCCCCTCAAACGAAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCT 53307443 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || ||||| ||| |||| | ||||||||| || || ||| Sbjct 53307444 AATGTCCGGCCATCCTCTAGCTGCTTGCCGGCAAATATGAGTCTTTGCTGGTCTGGAGGA 53307503 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || ||| | || | || || || || || Sbjct 53307504 ATGCCTTCCTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCGGAGCTCTCAACC 53307563 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| ||||| |||||||| | ||| |||||||| |||||||| Sbjct 53307564 TCAAGAGTAATAGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 53307610 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | |||||| ||||| || ||||| ||||| ||||| || | ||| || | Sbjct 53306940 CGCAGGACGAGATGAAGAGTGGACTCCTTTTGGATGTTGTAATCTGCTAAGGTACGCCCA 53306999 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | || | || ||||||||||| ||||| ||||| ||| Sbjct 53307000 TCCTCCAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGAGGAATTCCCTCCTTG 53307059 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | || || | || | |||||||| || || ||||| || || Sbjct 53307060 TCCTG-AATCTTGGCCTTCACGTTATCAATGGTGTCAGAGCTCTCCACCTCAAGCGTGAT 53307118 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || ||||| || || || ||||| || |||||| Sbjct 53307119 GGTCTTTCCAGTCAATGTCTTGACAAAGATTTGCATT 53307155 >seq1 Length=75119905 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| || || ||||||||||| || ||||| ||||| || | |||||| | Sbjct 27893831 CGAAGCACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCA 27893890 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || |||||||||||| | || | | ||||| ||||| ||||| ||||| ||| Sbjct 27893891 TCCTCAAGCTGTTTGCCAGCAAAGATTAGGCGCTGCTGGTCCGGTGGAATTCCCTCCTTG 27893950 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | |||||||| || || || ||||| || Sbjct 27893951 TCCTGGATCTTCGCCTTCACATTATCGATTGTGTCAGACGACTCGACCTCCAGAGTAATG 27894010 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || ||||| || ||||| Sbjct 27894011 GTCTTGCCTGTCAAGGTCTTGACAAAGATTTGCAT 27894045 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||||| | |||||||||||| ||||| || ||||| |||||||| ||||| || Sbjct 26504422 TCCACCCCTCAGCCTCAGCACCAAATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAGC 26504363 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || | ||| || |||||| | || | |||||||||||||| || Sbjct 26504362 TAACGTTCGCCCATCTTCCAATTGCTTTCCAGCAAAAATTAGCCTTTGCTGATCCGGGGG 26504303 Query 29679 AATACCCTCTTTGTCTTG 29696 ||| ||||||||||| || Sbjct 26504302 AATGCCCTCTTTGTCCTG 26504285 Score = 113 bits (124), Expect = 3e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || || ||||| ||||| ||||||||||| || || Sbjct 55138331 CCACCACGCAGACGAAGGACAAGGTGCAGGGTGGACTCTTTCTGAATGTTATAGTCTGCC 55138390 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| |||| || || || || | || | | ||||| || || ||| Sbjct 55138391 AAGGTGCGCCCATCGGCGAGCTGCTTCCCGGCGAAGATAAGACGCTGCTGGTCTGGAGGA 55138450 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || ||||| | ||| || || | || | ||||||||| || || Sbjct 55138451 ATGCCCTCCTTATCTTGGATTTTCGCCTTCACGTTATCGATAGTGTCAGATGACTCAACC 55138510 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAAC 29794 |||||||| || || ||||| || | ||| || |||||||||||||| | || || Sbjct 55138511 TCAAGAGTAATTGTCTTGCCTGTGAGGGTCTTCACAAATATCTGCATCTGAAGAC 55138565 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||| || || |||||||| || || |||||||||||||||| ||||| Sbjct 27880821 ACGGAGGACCAGGTGCAGTGTGGATTCCTTCTGGATGTTATAATCCGCAAGAGTGCGGCC 27880880 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | || | ||||| ||||| || | ||||| || Sbjct 27880881 ATCCTCAAGCTGCTTACCAGCAAAGATGAGCTGCTGCTGGTCCGGGGGTGTGCCCTCCTT 27880940 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || || ||| | || | ||||||||| || || || || || || Sbjct 27880941 ATCCTGGATCTTCGCCTTCACATTGTCGATTGTGTCAGAAGATTTAACCTCTAGGGTAAT 27881000 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| ||||| || || || |||||||| Sbjct 27881001 GGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 27881036 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| |||| || || ||||| || || || ||||| || || || | |||||| || Sbjct 28209607 CAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTC 28209548 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | || | | ||||| || || ||||| ||||| ||||| Sbjct 28209547 CTCAAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTC 28209488 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | ||| ||||| | || | ||||| || || || ||||| || || || Sbjct 28209487 CTGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCAAGGGTGATGGT 28209428 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| | ||| || ||||| |||||||| Sbjct 28209427 TTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 28209395 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| || || || || || || || |||||||||||||| | ||||| | Sbjct 27893375 CGGAGCACCAGGTGTAGGGTAGACTCCTTCTGGATGTTATAATCCGCCAGAGTGCGTCCA 27893434 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || |||||| | |||| | ||||| || || || || ||||| ||| Sbjct 27893435 TCCTCAAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTG 27893494 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || | || | ||||| ||| ||| || || || || || Sbjct 27893495 TCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGAAGATTCAACCTCCAGTGTAATG 27893554 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || ||||| |||||||| Sbjct 27893555 GTCTTCCCGGTCAAAGTCTTGACAAAGATCTGCAT 27893589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219068543948