Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq28 86.0 2e-12 seq3 86.0 2e-12 seq2 86.0 2e-12 seq1 86.0 2e-12 >seq28 Length=135199 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 12597 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 12656 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 12657 GCTCTACTCCGC 12668 >seq3 Length=59935730 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 28320274 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 28320215 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 28320214 GCTCTACTCCGC 28320203 >seq2 Length=59384932 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 16368896 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 16368837 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 16368836 GCTCTACTCCGC 16368825 >seq1 Length=75119905 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 54995508 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 54995449 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 54995448 GCTCTACTCCGC 54995437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181603139616936