Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 215 4e-50 seq4 123 2e-22 >seq1 Length=75119905 Score = 215 bits (238), Expect = 4e-50 Identities = 692/1060 (65%), Gaps = 18/1060 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| || || ||||||||||||||||| | || || ||| || ||||| || Sbjct 2510762 GCAGAGACGTTCAGAATACCATTGGCATCAATGTCGAAGCAGACAGTGATCTGAGGAACA 2510821 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || || ||||||| ||||| || | | ||| | || || ||| || || || Sbjct 2510822 CCCCTGGGAGCAGGCGGGATTCCAGAAAGTTCAAACTTGCCAAGGAGATTGTTGTCCCTA 2510881 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | | | |||||||| || | ||||| || ||| || ||||| || || Sbjct 2510882 GTCCTTGTCCTCTCACCCTCAAACACCTGGATCAATACACCAGGCTGGTTATCAGAGTAG 2510941 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || | || || ||| || || |||||| || ||||| || || | || Sbjct 2510942 GTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCTTGTGATGAGCACAGT 2511000 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||||| |||||||| || || | ||||||||| || ||||| ||||||| |||| || Sbjct 2511001 CATAACTCCACCAGCAGTCTCAAGACCAAGAGACAGTGGAGTCACATCAAGGAGGAGAAG 2511060 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 | || | || |||| | |||| ||| ||||| || || | |||||||||||| Sbjct 2511061 GTCCTGCACCTTCTCATTCCCCTCACCACTAAGGATAGCAGCCTGGACAGCAGCACCATA 2511120 Query 281785 TGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 |||||||| |||||||| |||| | || || |||| || |||||||| || | Sbjct 2511121 GGCAACAGCCTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTCCCATTGAAGAAGTCC 2511178 Query 281843 GAAAGAAGTTGTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 || || || || | || |||| || | || || || ||||| | |||| ||||| Sbjct 2511179 TGCAGCAGCTG-CTGAACTCTAGGGATTCTAGTAGAACCACCAACAAGGACAACATCATG 2511237 Query 281902 CACCTGTGAT-TTATCCAGTTTTGAATCCAATAAA-ACTTTTTCAACGGGTTCAAGACCA 281959 | ||| | || |||| || | |||| | |||| | || || | || | | Sbjct 2511238 GATA-GTGCTCTTGTCCATCTTGGCATCCCTCAGGCACTTCTCCACAGGCTCCATGCACT 2511296 Query 281960 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 282019 | || || | ||| ||| || || || | || || || | ||| || || Sbjct 2511297 TC-CTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCCCTGGTGATCGTGGAATAGAAA 2511355 Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 |||| ||||| | | ||||||| ||| || |||||||| | | ||||| || | Sbjct 2511356 TCAACACCTTCATAGAGGGAATCAATTTCGATGGTAGTTTGGGCTGTGGAAGAAAGCGTT 2511415 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA 282139 | || || | ||||||| ||||| || || | || | | | | | | | | Sbjct 2511416 CTCTTCGCCCTCTCACATGAAGTCCTGAGCCTCCTCAAAGACCTGGGGTTTCCACTGATA 2511475 Query 282140 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 282199 || | || | ||| ||||| || |||| ||| | | || || ||||| ||||| Sbjct 2511476 TCCTTCTTGTGTTTCCTCTTAAATTCTTGGACAAAGTGGTTAACCAGGCGATTGTCAAAG 2511535 Query 282200 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 282259 || || || || | | ||| | || | || || | || | ||| | || || ||| Sbjct 2511536 TCCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCCTTCACCTCGAAGATACCCTCCTCA 2511595 Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319 | || | |||| |||||| || |||||||| | ||||||||||| |||||| | Sbjct 2511596 ATAGTGAGGAGAGAGACATCAAAAGTGCCACCACCGAGGTCAAAAATAAGCACATTCTTC 2511655 Query 282320 TCTTTGTCT-TGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 || | |||| | || ||||||||||| |||| ||||| |||||||| || Sbjct 2511656 TCACCAACACTGGTAGCCTTCTTGTCAAGACCATAGGCAATTGCAGCTGCAGTTGGCTCG 2511715 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433 || || || | || ||||||||||||||||| || ||||| ||||| || || || Sbjct 2511716 TTGATGATACGCATGACATTAAGACCAGCAATAACACCAGCATCCTTAGTTGCCTGCCTC 2511775 Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || ||||| || || || ||||||||||| | ||| |||| Sbjct 2511776 TGGGAATCATTGAAGTAAGCAGGAACAGTGACAACAGCAT 2511815 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || | || |||||||||||||||||||||||| || || |||| ||| |||||| Sbjct 74171015 CCGTAAGAAAGAGCAGCAGCAGTTGGTTCATTAATGATCCTTTCGACATCAAGTCCAGCA 74171074 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || ||||| |||||||| || | || | ||| || ||||| || ||||||||| Sbjct 74171075 ATACGGCCAGCATCCTTAGTGGCCTGCCGCTGAGCATCATTGAAATAAGCTGGAACAGTA 74171134 Query 282464 ATAACGGC 282471 || || || Sbjct 74171135 ATCACAGC 74171142 >seq4 Length=48772488 Score = 123 bits (136), Expect = 2e-22 Identities = 538/830 (65%), Gaps = 32/830 (4%) Strand=Plus/Minus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||||| ||| |||||||| || | ||||||||||||||| |||||||| | || | Sbjct 3419636 GTCATAACACCTCCAGCTGTCTCCAGACCAAGAGAAAGAGGGGTGACATCCAACAGCAGC 3419577 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 281781 | | || | || |||| | || ||||| | || || || | |||||| || Sbjct 3419576 AGGTCCTGGACCTTCTCATTGCCCTCTCCGCTCAAGA-TGGCAGCCTGGACAGCAGCCCC 3419518 Query 281782 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839 || |||||||| |||||||| || | | || || || | || || ||||| || Sbjct 3419517 GTAGGCAACAGCCTCATCAGGGTTGATGCTCTTGCAC--AGCTCCTTGCCGTTGAAGAAG 3419460 Query 281840 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 | |||||| || || | ||||| | | || || ||||| | |||| ||| Sbjct 3419459 TCCTGAAGAAGCTGCTGCACTCTGGGAATCCTGGTGGAACCACCAACAAGGACAACATCA 3419400 Query 281900 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAA-ACTTTTTCAACGGGTTCAAGAC 281957 ||||| ||| | ||||||| || | |||| | |||| | || || | || | Sbjct 3419399 TGCACA-GTGCTCTTATCCATCTTGGCATCCCTGAGGCACTTCTCCACAGGCTCCATGCA 3419341 Query 281958 CAGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | || |||| || || || || || || | || | || | ||| | | Sbjct 3419340 CTTC-CTGAACAGATCCATGTTCATC--TCCTCAAACCTGGCACGGGTGATGGTGG-AGT 3419285 Query 282016 ATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAG 282071 | || ||||| || ||||||| || |||| ||||| || || || ||| || || | Sbjct 3419284 AGAAGTCAATGCCCTCGAACAGCGAGTCAATCTCAATGGTGGTCTGGGCAGTGGAGGA-G 3419226 Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT 282131 | ||| | | || || | ||||| | |||||| || || || | || ||| | || Sbjct 3419225 AGAGTCCTCTTT--GCCCTCTCACAGGATGTCCTCAGCCTCCGGAGAGCCCTTG--GGTT 3419170 Query 282132 G--ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 282189 | | | | || | || | |||||||| || || | || | | || | | Sbjct 3419169 GCCACTGATGTCCTTCTTGTTCTTTCTCTTAAACTCCTGGACGAAGTGGTTGACCATCCT 3419110 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 || |||||||| ||||| || | | ||| | || | || || | || | || | Sbjct 3419109 GTTGTCAAAATCCTCACCACCAAGGTGAGTGTCACCAGCTGTGGCCTTGACCTCAAAGAT 3419050 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 || || |||| | | ||| | ||||| ||| || || || | |||||| || || Sbjct 3419049 ACCCTCCTCAATGGTGAGAAGGGAGACATCGAAGGTACCGCCTCCAAGATCAAAGATGAG 3418990 Query 282310 TACATTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGC 282363 |||||| | || | ||| || || ||||||||||| |||| |||||||| Sbjct 3418989 GACATTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGC 3418930 Query 282364 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 282423 |||||| || || || || | || |||||| | |||||||| || ||||| || || Sbjct 3418929 AGTTGGCTCGTTGATGATACGCAGAACATTGATGCCAGCAATGACACCAGCATCCTTGGT 3418870 Query 282424 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 ||| || || || || || || || |||||||||||||| | |||||||| Sbjct 3418869 GGCCTGCCTCTGCGAGTCATTGAAGTATGCAGGAACAGTGACAACGGCAT 3418820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629025318328