Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3 84.2 5e-11 seq1 84.2 5e-11 >seq3 Length=59935730 Score = 84.2 bits (92), Expect = 5e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAA- 305382 |||| ||||| |||||| ||||||| || || |||||||| || |||| ||| Sbjct 14831115 GATTTTGTTCTTTTCAATCGGCAACCCAGTCTTCACAAAATGTCCATCATGGGGCATCGG 14831174 Query 305383 AGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAA 305442 | | ||| ||| || | ||||| || ||||| | || | | | || || || Sbjct 14831175 ATTAAAATTATGCCCTAC-TCAACATTCCGCTTAAACTTGTCTGTTACTTCACCATACAA 14831233 Query 305443 TGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||| ||||||||||| |||||||||||||||||||| ||||| || Sbjct 14831234 TGCAGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAGTC 14831278 >seq1 Length=75119905 Score = 84.2 bits (92), Expect = 5e-11 Identities = 163/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 110523 TGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAA 110582 ||||| ||| | | || || |||||| ||||| ||||| |||||| |||| || ||| Sbjct 47004079 TGCTTCCTTATTTGCATGAAAGATGATAGCATTGAGGGTATCTATGATACTCTGAAGGAA 47004138 Query 110583 ACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTAT-TCACGTTCATGATATTCGCTC 110641 |||| | || ||| |||||||||||||| | ||| ||||| | ||||| | Sbjct 47004139 TGTGCTGTCATCAGCAAATCTGCTGGAGGAATTGGTGTCTCA-GTTCACAACATTCGTGC 47004197 Query 110642 -AAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAA 110700 | ||||| ||||| | |||| || | || | ||| ||||||| |||||| Sbjct 47004198 TACTGGGAGC-TATATCCGTGGAACGAATGGAACATCCAATGGGATTGTTCCTATGTTAC 47004256 Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGT---GGTAAGAGAAATGG 110752 | || ||||| || ||||| ||||| |||||||| || |||||||| || Sbjct 47004257 GTGTTTTCAATGATACTGCTCGTTATGTAGATCAAGGTGGAGGCAAGAGAAAGGG 47004311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812374230908