Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 2e-15 seq1 87.8 1e-12 seq2 84.2 1e-11 >seq3 Length=59935730 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | || | ||||| || || ||| ||| || || |||||||| || | Sbjct 2681469 ACCACCTCGAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 2681528 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || ||||| ||||| |||| |||||||| || | || Sbjct 2681529 AAGGGTGCGGCCATCCTCCAGCTGCTTTCCTGCAAAGATCAGGCGCTGCTGGTCCGGGGG 2681588 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| || || |||| | | |||| |||||| ||| |||| Sbjct 2681589 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGATGACTCCA 2681647 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || || ||||||||||||||| Sbjct 2681648 CCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCATA 2681697 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | || | || || ||| ||| || || |||||||| |||| Sbjct 2681925 ACCACCACGCAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 2681984 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||| || || || ||||| |||| ||||||||| || | || Sbjct 2681985 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGG 2682044 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || || || || || |||| | | |||| |||||| ||| |||| Sbjct 2682045 AATGCCCTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGATGACTCCA 2682103 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || || ||||||||||||||| Sbjct 2682104 CCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCATA 2682153 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||| | || || ||| ||| || || |||||||| || | Sbjct 3234591 ACCACCACGCAGACGCAGCACTAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 3234650 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| |||||||||||||| || | || Sbjct 3234651 AAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCCGGGGG 3234710 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || | | |||| ||| | |||||| || || | Sbjct 3234711 GATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACATTGTCAATGGTGTCTGACGACTCAA 3234769 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || ||||| | || || || ||||||||||| Sbjct 3234770 CCTCAAGGGTGATGGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCAT 3234818 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || ||||||||||| | || ||||| |||| || | || Sbjct 13693469 TGCAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGCCCGTCCTCAAGCTGC 13693410 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || |||||||||| |||||||| || | || | || || ||||| ||| ||| Sbjct 13693409 TTCCCAGCAAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGAATCTTC 13693350 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | || | ||| | ||||| || || || || | ||||| || ||||| || Sbjct 13693349 -GCCTTGACGTTGTCGATTGTGTCCGAAGACTCAACCTCCAAAGTGATGGTCTTACCAGT 13693291 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | ||| || |||||||||||||| Sbjct 13693290 AAGCGTCTTGACAAAGATCTGCAT 13693267 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/207 (69%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| |||||| ||| ||||| ||||||||||| | | || || | || |||| || Sbjct 53306951 ATGAAGAGTGGACTCCTTTTGGATGTTGTAATCTGCTAAGGTACGCCCATCCTCCAGCTG 53307010 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||||||||||| || | | ||||||||| | || | || || ||||| ||| || Sbjct 53307011 CTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGAATCTT 53307070 Query 33666 CTGTTTCAACATAGTCACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722 |||| || | |||||| ||| ||||| |||| |||||| || || || Sbjct 53307071 GGCCTTCACGTTATCAATGGTGTCAGAGCT---CTCCACCTCAAGCGTGATGGTCTTTCC 53307127 Query 33723 TGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || |||||||| ||||| Sbjct 53307128 AGTCAATGTCTTGACAAAGATTTGCAT 53307154 >seq1 Length=75119905 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || || ||| ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 28209603 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCA 28209544 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| ||||| || | |||||||| ||| | || | || || ||||| Sbjct 28209543 AGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGG 28209484 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | || | ||| | |||||| || || || |||| ||||| ||||| Sbjct 28209483 ATCTT-TGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTTTT 28209425 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || |||||||||||||| Sbjct 28209424 GCCAGTGAGGGTCTTCACAAAGATCTGCAT 28209395 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| ||| || || ||||||||||| | Sbjct 28210533 CCACCACGGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCTGCA 28210474 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || || || ||||| || | |||||||| ||| | || Sbjct 28210473 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGG 28210414 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | || | ||| | |||||| ||||| || Sbjct 28210413 ATGCCCTCCTTGTCCTGGATCTT-TGCCTTCACGTTGTCAATGGTGTCCGAAGATTCAAC 28210355 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || ||||| ||||| || || ||||||||||| Sbjct 28210354 CTCCAGTGTGATGGTCTTCCCTGTCAACGTCTTAACGAAGATCTGCAT 28210307 >seq2 Length=59384932 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| || | ||||| || || ||| ||| || || |||||||| |||| | Sbjct 10639229 CCTCCCCTCAGTCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 10639288 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || ||||| || || | |||||||| || | || Sbjct 10639289 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGG 10639348 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || || || |||| | | ||| | |||||| || ||||| Sbjct 10639349 ATGCCCTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 10639407 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||| || ||||| || | || || || ||||||||||| Sbjct 10639408 CTCCAGCGTGATGGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 10639455 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| || || ||| ||| || || |||||||| |||| | Sbjct 34837778 CCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 34837837 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || ||||| || || | |||||||| || |||| Sbjct 34837838 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 34837897 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || |||| | | ||| | |||||| || ||||| Sbjct 34837898 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 34837956 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||| || || || || | || || || ||||||||||| Sbjct 34837957 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 34838004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703887829760