Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3 125 2e-23 seq1 102 2e-16 seq2 89.7 1e-12 >seq3 Length=59935730 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || || ||| |||| || || || |||||||| | || Sbjct 53307367 AAGACACTTACAGGGAAGACCATAACTCTGGAGGTCGAGAGCTCTGACACCATTGACAAT 53307308 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||| || || || || || || ||| || || |||||||| Sbjct 53307307 GTGAAGGCAAAGATTCAGGATAAGGAGGGCATCCCACCTGACCAGCAGAGGCTTATCTTT 53307248 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || ||||| | || ||||| |||||||| ||||||| |||||| Sbjct 53307247 GCCGGAAAGCAGCTTGAGGATGGCCGTACATTGGCTGATTACAATATCCAGAAGGAGTCT 53307188 Query 206365 ACTCTTCACCTTGT 206378 ||||||||||| || Sbjct 53307187 ACTCTTCACCTCGT 53307174 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| |||| ||||| || |||||| Sbjct 2681921 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGAGCTCTGAC 2681862 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| |||||| || Sbjct 2681861 ACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 2681802 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| ||||||||| |||| ||||| | || | || || |||||| || Sbjct 2681801 CGTCTGATCTTCGCAGGAAAGCAGCTGGAGGATGGTCGCACCCTTGCTGACTACAACATC 2681742 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 2681741 CAGAAGGAGTCCACCCTTCACCTTGT 2681716 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || ||||| || ||||| | || ||||| || |||||| Sbjct 53307151 CAAATCTTTGTCAAGACATTGACTGGAAAGACCATCACGCTTGAGGTGGAGAGCTCTGAC 53307092 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || |||||| ||||| || Sbjct 53307091 ACCATTGATAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGATCAGCAG 53307032 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| |||||||||||| |||| ||||| | || || || ||||||||| || Sbjct 53307031 AGGCTCATCTTTGCCGGAAAGCAGCTGGAGGATGGGCGTACCTTAGCAGATTACAACATC 53306972 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| |||||||| || || || | ||||| Sbjct 53306971 CAAAAGGAGTCCACTCTTCATCTCGTCCTGCGCCTTCG 53306934 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || || ||| | || || || || || || Sbjct 53307607 CAGATCTTTGTTAAGACCCTCACTGGCAAGACTATTACTCTTGAGGTTGAGAGCTCCGAT 53307548 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || || || || ||||| ||| || ||| ||| Sbjct 53307547 ACCATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCTCCAGACCAGCAA 53307488 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| || || ||||| |||||| | || ||||| |||| || || ||||||||| || Sbjct 53307487 AGACTCATATTTGCCGGCAAGCAGCTAGAGGATGGCCGGACATTAGCTGATTACAACATC 53307428 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||||||||||||||||||| Sbjct 53307427 CAGAAGGAGTCTACTCTTCACCTTGTT 53307401 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| ||||| || || || || ||||||||||| || || ||| ||| Sbjct 13693270 CAGATCTTTGTCAAGACGCTTACTGGTAAGACCATCACTTTGGAGGTTGAGTCTTCGGAC 13693329 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| ||||||||||| || || || || || ||| || Sbjct 13693330 ACAATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGCATCCCCCCTGACCAGCAG 13693389 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || || |||||| | || || || | || |||| ||||||||| || Sbjct 13693390 CGCCTGATTTTTGCTGGGAAGCAGCTTGAGGACGGGCGCACCCTGGCGGATTACAACATC 13693449 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || |||||||| Sbjct 13693450 CAGAAGGAGTCCACCCTGCACCTTGT 13693475 Score = 102 bits (112), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || || || | || || || |||||| Sbjct 13692587 CAGATTTTTGTGAAGAC-CTCACTGGCAAGACAATTACCCTTGAGGTCGAGTCATCTGAC 13692645 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||| |||||||| || || || ||| |||||| || Sbjct 13692646 ACGATCGATAATGTGAAGGCAAAAATTCAAGATAAGGAGGGCATTCCTCCGGACCAGCAG 13692705 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| ||| || | || ||||| | || ||||| || ||||| | Sbjct 13692706 CGTCTTATCTTCGCCGGGAAGTAGCTTGAGGATGGTCGCACCTTGGCGGACTACAATATT 13692765 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||||||| || |||||||| Sbjct 13692766 CAGAAAGAGTCTACCCTGCACCTTGT 13692791 Score = 100 bits (110), Expect = 7e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||||||||||||||| ||||||| ||| || |||||||| || | ||||| || Sbjct 53307174 ACGAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGCCAATGTACGGCCATCCTCA 53307233 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||||||||| |||||||||| Sbjct 53307234 AGCTGCTTTCCGGCAAAGATAAGCC 53307258 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| | || ||||| |||||| Sbjct 2682149 CAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCATCTGAC 2682090 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| |||||| || Sbjct 2682089 ACCATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAG 2682030 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| |||||||||| | || | ||||| |||||| || Sbjct 2682029 CGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCGCCGACTACAACATC 2681970 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 2681969 CAGAAGGAGTCCACCCTTCACCTTGT 2681944 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||||||||| || ||| ||||||| Sbjct 13692814 CAGATTTTTGTGAAGACCCTTACTGGCAAGACCATCACTTTGGAGGTTGAATCTTCTGAC 13692873 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||||||| || || || || || ||| || Sbjct 13692874 ACGATAGATAATGTCAAGGCAAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAGCAG 13692933 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| | || ||||| || || || || || ||| | Sbjct 13692934 CGCCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGGCACACCTTAGCAGACTATAACATT 13692993 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || |||||||| || || |||||||| Sbjct 13692994 CAAAAAGAGTCCACCCTGCACCTTGT 13693019 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || || |||||||| || || || || Sbjct 13693042 CAGATCTTCGTCAAGACACTCACCGGCAAGACCATTACTTTGGAGGTCGAGTCATCGGAT 13693101 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||||||| || ||||| || || ||| || Sbjct 13693102 ACGATTGACAATGTCAAGGCAAAGATTCAAGACAAGGAAGGCATCCCCCCTGACCAGCAG 13693161 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| | || || || | || |||| ||||||| | | Sbjct 13693162 CGCCTCATCTTTGCTGGGAAGCAGCTTGAGGACGGGCGCACCCTGGCGGATTACAGCATT 13693221 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||||||| || |||||||| Sbjct 13693222 CAGAAAGAGTCTACCCTACACCTTGT 13693247 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || |||||||| |||| ||||| || ||||| |||| Sbjct 31827777 AAGACGCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCATCGGACACGATCGAGAAC 31827718 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||| | || || || || || | |||||| || | || |||||| Sbjct 31827717 GTGAAGGCCAAGGTGCAGGACAAGGAGGGGGTCCCGCCGGAGCAGCAGCGGCTCATCTTC 31827658 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || ||||||| |||||||||||||| ||||| Sbjct 31827657 GCCGGGAAGCAGCTGGAGGACGGGCGCACGCTGGCCGACTACAACGTCCAGAAGGAGTCC 31827598 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 31827597 ACCCTCCACCTCGT 31827584 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| | || ||||| |||||||| |||| || ||| Sbjct 3235022 ACTGGCAAGACCATCACCCTTGAGGTGGAGTCATCTGACACCATCGACAATGTGAAGGCC 3234963 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || || || || ||| || | ||||||||||| || ||| Sbjct 3234962 AAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTTATCTTCGCAGGCAAG 3234903 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | |||||||| ||||| | || || |||||| ||||||| ||||| ||||| ||| Sbjct 3234902 CAGCTTGAAGATGGCAGGACCCTTGCGGACTACAACATCCAGAAGGAGTCCACTCTGCAC 3234843 Query 206374 CTTGT 206378 || || Sbjct 3234842 CTGGT 3234838 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| || |||||||||||||| | ||| ||||| ||||| || | ||||| || Sbjct 13692791 ACAAGGTGCAGGGTAGACTCTTTCTGAATATTGTAGTCCGCCAAGGTGCGACCATCCTCA 13692732 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||| ||| |||||||||||||| || || || Sbjct 13692731 AGCTACTTCCCGGCGAAGATAAGACGCTGCTG 13692700 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||||||||||||||||||||| ||||||| || || ||||| || |||| ||||| || Sbjct 53307401 AACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCAGCTAATGTCCGGCCATCCTC 53307460 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||| || || || | ||| || Sbjct 53307461 TAGCTGCTTGCCGGCAAATATGAGTCTTTGCTG 53307493 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| || ||||| ||||||| || |||||||| | || | ||||| ||| Sbjct 2681716 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGACCATCCTCC 2681775 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||| |||||||| || || || || Sbjct 2681776 AGCTGCTTTCCTGCGAAGATCAGACGCTGCTG 2681807 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| ||||| ||||| ||||||| || ||||| || | ||||| |||||||| Sbjct 3234838 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTCCTGCCATCTTCA 3234897 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || ||||||||||| || || || Sbjct 3234898 AGCTGCTTGCCTGCGAAGATAAGGCGCTGCTG 3234929 >seq1 Length=75119905 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||| | || || || ||| ||| Sbjct 28416039 CAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCTTCGGAC 28416098 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||| || || || || || ||| |||||| || Sbjct 28416099 ACAATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 28416158 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| | |||||||| | || |||| || |||||| || Sbjct 28416159 CGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGTACCCTGGCTGACTACAACATC 28416218 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 28416219 CAGAAGGAGTCGACCCTTCACCTTGT 28416244 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || || |||||||| || || || ||| | || || || |||||| Sbjct 55138554 CAGATATTTGTGAAGACCCTCACAGGCAAGACAATTACTCTTGAGGTTGAGTCATCTGAC 55138495 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || || ||||| || || || ||| || ||| || Sbjct 55138494 ACTATCGATAACGTGAAGGCGAAAATCCAAGATAAGGAGGGCATTCCTCCAGACCAGCAG 55138435 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| |||||| | | ||||| | || ||||| || || ||| | Sbjct 55138434 CGTCTTATCTTCGCCGGGAAGCAGCTCGCCGATGGGCGCACCTTGGCAGACTATAACATT 55138375 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || |||||||| Sbjct 55138374 CAGAAAGAGTCCACCCTGCACCTTGT 55138349 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | ||||| || || ||||| |||| || || |||||| Sbjct 27893814 CAGATCTTTGTCAAGACCTTGACAGGGAAGACAATCACACTGGAGGTCGAGTCGTCTGAC 27893755 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| ||||| || || || || || ||| |||||| || Sbjct 27893754 ACAATCGATAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGACCAGCAG 27893695 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| |||||| | || ||||| | || | || |||||||| || Sbjct 27893694 CGCCTTATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCTGATTACAATATC 27893635 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || || ||||| || Sbjct 27893634 CAGAAGGAATCCACCCTGCACCTGGT 27893609 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| | || || || |||||| Sbjct 27894498 CAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGAT 27894439 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||| || || || || || || |||||| || Sbjct 27894438 ACGATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 27894379 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || |||| ||||||||| || Sbjct 27894378 CGTCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGATTACAACATC 27894319 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || || || Sbjct 27894318 CAGAAGGAGTCCACCCTCCATCTGGT 27894293 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| || || ||||||||||| | |||||||| ||||| || | ||||| | Sbjct 55138349 ACAAGGTGCAGGGTGGACTCTTTCTGAATGTTATAGTCTGCCAAGGTGCGCCCATCGGCG 55138408 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| |||||||||||||| || || || Sbjct 55138409 AGCTGCTTCCCGGCGAAGATAAGACGCTGCTG 55138440 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| | || || || || ||| Sbjct 28415355 CAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCCTCGGAC 28415414 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || |||||| || Sbjct 28415415 ACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 28415474 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || |||||| | || ||||| | || |||| || |||||| || Sbjct 28415475 CGCCTTATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCTGACTACAACATC 28415534 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 28415535 CAGAAGGAGTCCACACTCCACCTGGT 28415560 >seq2 Length=59384932 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| |||| ||||| || ||||| |||| Sbjct 10639440 AAGACCCTCACGGGTAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 10639381 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || |||||| || | || |||||| Sbjct 10639380 GTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAGCAGCGGCTCATCTTC 10639321 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || | ||||| |||||| ||||||| ||||| Sbjct 10639320 GCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 10639261 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 10639260 ACGCTGCACCTGGT 10639247 Score = 86.0 bits (94), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 206161 GCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTG 206220 ||||| ||| ||||| || || || || || || || || ||||| |||| ||| Sbjct 34838010 GCTAAGATG---CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTG 34837954 Query 206221 GAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTG 206280 || || ||||| |||| || ||| ||||| || || || || || || | Sbjct 34837953 GAGTCCTCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCG 34837894 Query 206281 CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCC 206340 |||||| || | || ||||||||||| |||||| | || || || | || | ||| Sbjct 34837893 CCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCC 34837834 Query 206341 GATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 || |||||| ||||||| ||||| || || ||||| || Sbjct 34837833 GACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGT 34837796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820376021788