Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 2e-12 >seq1 Length=75119905 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGA-GACCGCCACGCTGGCCGAGCGCAT 46834 |||||| | ||||||||| |||||||| ||| || ||| | ||||||||| | Sbjct 42405992 AAGGCCGAATGGGCCATGCGCTGGATCGACGGCGGCGAGCGCT----TTGCCGAGCGCCT 42406047 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTA 46894 ||| || ||||| ||||| || | || || |||||| || |||||| || | Sbjct 42406048 GGTCGCCTTCGCCTGCGTCGAGGGGATATTCTTCTCGGGCTCCTTCTGCGCCATCTTCTG 42406107 Query 46895 CATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGA 46954 | || | ||| | ||||||||||| || ||| |||||| | ||||| ||||| Sbjct 42406108 GCTCAAGAAGCGCGGCCTCATGCCGGGCCTAACTTTCTCCAACGAGCTTATCTCCCGCGA 42406167 Query 46955 CGAAGGACTACACACGGACTTTGCGTGTCTC 46985 |||||| || ||| |||||||| || ||| Sbjct 42406168 CGAAGGCCTGCACTGCGACTTTGCCTGCCTC 42406198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611033186080