Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 107 3e-18 >seq1 Length=75119905 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||||| || | ||||| | ||| | || | | ||| |||| ||| || Sbjct 47004297 TCCACCTTGATCTACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCC 47004238 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||||| |||||| ||||| || || | || ||||| || || || Sbjct 47004237 ATTGGATGTTCCATTCGTTCCACGGATATAGCTCCCAGTAGCACGAATGTTGTGAACTGA 47004178 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| ||| | |||||| |||| || ||||| || Sbjct 47004177 GACACCAATTCCTCCAGCAGATTTGCTGATGACAGCACATTCCTTCAGAGTATCATAGAT 47004118 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 |||||| |||||||||||| ||||| || ||| || ||||| Sbjct 47004117 ACCCTCAATGCTATCATCTTTCATGCAAATAAGGAAGCAGCT 47004076 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || || ||||| || | || | ||||| || || ||||| Sbjct 54132919 GCAGGCGAAGTCGCAGTGCAGCCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAG 54132978 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| ||||||||||| |||||||| || ||||| ||| || || || || |||| Sbjct 54132979 CCCCGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 54133037 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 54133038 AGATGCCCTCGAC 54133050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908559581920