Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2 118 9e-22 seq3 98.7 8e-16 seq1 93.3 4e-14 >seq2 Length=59384932 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||||| || | |||| || | || || || || || || ||||||||| Sbjct 34837777 GCCACCGCGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 34837836 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| |||| |||||||| || |||||| | ||||| ||||| || |||||||| Sbjct 34837837 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 34837896 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||| | || || || Sbjct 34837897 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 34837956 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 34837957 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 34838004 >seq3 Length=59935730 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| |||||||| | | |||| | || || ||||| || || Sbjct 2682184 GTGGACTCCTTCTGAATGTTGTAGTCAGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCA 2682243 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| ||||| ||||||| || Sbjct 2682244 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 2682303 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||||| || || || || | ||||| |||| ||| Sbjct 2682304 ACGTTGTCGATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTC 2682363 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 2682364 TTCACAAAGATCTGCAT 2682380 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| | ||||| ||||| || || Sbjct 2681956 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 2682015 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || |||||||| || ||||| || | ||||| ||||| ||||||| ||| Sbjct 2682016 GCAAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTC 2682075 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| |||| ||| Sbjct 2682076 ACGTTGTCAATGGTGTCAGATGACTCCACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTC 2682135 Query 27231 TTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 2682136 TTCACAAAGATCTGCATA 2682153 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| |||||||||||||| || | |||| | || || |||| || ||| Sbjct 13692779 GTAGACTCTTTCTGAATATTGTAGTCCGCCAAGGTGCGACCATCCTCAAGCTACTTCCCG 13692720 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || ||||| || | ||||| ||||| || || ||| Sbjct 13692719 GCGAAGATAAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTATCTTGAATTTTTGCCTTC 13692660 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || || || || || | ||||| || || || Sbjct 13692659 ACATTATCGATCGTGTCAGATGACTCGACCTCAAGGGTAATTGTCTTGCCAGTGAG-GTC 13692601 Query 27231 TTCACAAAGATTTGCAT 27247 |||||||| || ||||| Sbjct 13692600 TTCACAAAAATCTGCAT 13692584 >seq1 Length=75119905 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | |||| || | || || || || || || |||||||| Sbjct 28415580 TGCCACCACGCAGCCTGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAG 28415521 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | || |||||||| || || ||| | || || ||||| || ||||| | Sbjct 28415520 CCAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATAAGGCGCTGCTGGTCCGGGG 28415461 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| |||| | | || | ||||| | || || | Sbjct 28415460 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGA 28415401 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || || ||||||||||| ||||| Sbjct 28415400 CCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 28415352 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | || || ||||| ||||| Sbjct 28416460 GTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCA 28416401 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | || || || || ||||||| ||| Sbjct 28416400 GCGAATATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 28416341 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | | |||||||| || || || | ||||| || || || Sbjct 28416340 ACATTGTCAATAGTGTCAGATGACTCAACTTCAAGCGTGATGGTCTTGCCTGTGAGGGTC 28416281 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 28416280 TTCACGAAGATCTGCAT 28416264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934254991136